Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021699 | Potato | cytosol | 77.11 | 97.48 |
| CDY40145 | Canola | cytosol, extracellular, plastid | 19.4 | 46.43 |
| GSMUA_Achr6P13480_001 | Banana | cytosol | 56.22 | 43.97 |
| Bra028327.1-P | Field mustard | extracellular, vacuole | 29.35 | 35.76 |
| PGSC0003DMT400010422 | Potato | cytosol | 75.12 | 16.01 |
| Solyc06g069230.2.1 | Tomato | cytosol | 74.13 | 15.8 |
| VIT_17s0000g04170.t01 | Wine grape | cytosol | 63.18 | 13.44 |
| KRH03809 | Soybean | nucleus | 62.69 | 13.38 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 57.21 | 12.21 |
| AT3G18524.1 | Thale cress | nucleus | 56.72 | 12.17 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 57.71 | 12.1 |
| CDY52899 | Canola | nucleus | 56.22 | 12.06 |
| PGSC0003DMT400032552 | Potato | cytosol, peroxisome, plastid | 25.37 | 12.06 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 57.71 | 12.03 |
| Os05t0274200-01 | Rice | cytosol | 56.22 | 12.0 |
| EER99643 | Sorghum | nucleus | 56.22 | 12.0 |
| Bra001709.1-P | Field mustard | nucleus | 55.72 | 11.95 |
| CDX82340 | Canola | nucleus | 55.22 | 11.85 |
| HORVU1Hr1G030930.22 | Barley | plastid | 57.71 | 11.63 |
| Zm00001d022028_P005 | Maize | nucleus | 43.28 | 9.78 |
| PGSC0003DMT400057653 | Potato | plastid | 15.42 | 4.48 |
| PGSC0003DMT400001555 | Potato | cytosol | 2.49 | 2.54 |
| GSMUA_Achr6P13490_001 | Banana | cytosol | 1.49 | 0.46 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DNA_mismatch_repair_MutS_C | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030983 | GO:GO:0032300 | UniProt:M1AFK0 | InterPro:Msh2 | InterPro:P-loop_NTPase |
| PFAM:PF00488 | EnsemblPlantsGene:PGSC0003DMG400008417 | PGSC:PGSC0003DMG400008417 | EnsemblPlants:PGSC0003DMT400021697 | ScanProsite:PS00486 | PANTHER:PTHR11361 |
| PANTHER:PTHR11361:SF35 | SMART:SM00534 | SUPFAM:SSF52540 | UniParc:UPI000294E4FC | : | : |
Description
Mismatch repair protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008417]
Coordinates
chr11:+:18174446..18175258
Molecular Weight (calculated)
22345.3 Da
IEP (calculated)
5.131
GRAVY (calculated)
-0.447
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQSVGSFVP CDNATISIRD CIFSRVGAGD SQLKGVSSFM QEMLETAWIL KGAANRSLII IDEFCRGTST YDGFGLAWAI CEHIVEEIKA PTLFPTHFHE
101: LTALENENGN NGPKQIAGLT NFQRKGSELE DFSPNAMMPN KCKEAVSKRM RESDSHDVSR GTTRARQFLR DFILHQEAHN HPEREEETEA GGDVEVLPKS
201: L
101: LTALENENGN NGPKQIAGLT NFQRKGSELE DFSPNAMMPN KCKEAVSKRM RESDSHDVSR GTTRARQFLR DFILHQEAHN HPEREEETEA GGDVEVLPKS
201: L
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.