Factsheet for PGSC0003DMT400021699

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	97.48	77.11
GSMUA_Achr6P13480_001	Banana	cytosol	49.69	30.74
Bra028327.1-P	Field mustard	extracellular, vacuole	20.13	19.39
PGSC0003DMT400010422	Potato	cytosol	71.7	12.09
Solyc06g069230.2.1	Tomato	cytosol	70.44	11.88
VIT_17s0000g04170.t01	Wine grape	cytosol	57.86	9.74
KRH03809	Soybean	nucleus	56.6	9.55
TraesCS1D01G131600.3	Wheat	nucleus	50.94	8.6
TraesCS1A01G135100.1	Wheat	nucleus	51.57	8.55
TraesCS1B01G149700.3	Wheat	nucleus	51.57	8.51
EER99643	Sorghum	nucleus	50.31	8.49
AT3G18524.1	Thale cress	nucleus	49.69	8.43
CDY52899	Canola	nucleus	49.69	8.43
Os05t0274200-01	Rice	cytosol	49.69	8.39
Bra001709.1-P	Field mustard	nucleus	49.06	8.32
HORVU1Hr1G030930.22	Barley	plastid	51.57	8.22
CDX82340	Canola	nucleus	48.43	8.22
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	21.38	8.04
CDY40145	Canola	cytosol, extracellular, plastid	3.77	7.14
Zm00001d022028_P005	Maize	nucleus	33.33	5.96
PGSC0003DMT400057653	Potato	plastid	14.47	3.32
PGSC0003DMT400001555	Potato	cytosol	3.14	2.54
GSMUA_Achr6P13490_001	Banana	cytosol	1.26	0.3

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_mismatch_repair_MutS_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	GO:GO:0032300	UniProt:M1AFK1	InterPro:Msh2	InterPro:P-loop_NTPase
PFAM:PF00488	EnsemblPlantsGene:PGSC0003DMG400008418	PGSC:PGSC0003DMG400008418	EnsemblPlants:PGSC0003DMT400021699	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF35	SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI000294F559	:	:

Description

Mismatch repair protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008418]

Coordinates

chr11:+:18170132..18170818

Molecular Weight (calculated)

17819.0 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.608

Length

159 amino acids

Sequence
(BLAST)

001: MLETAWILKG AANRSLIIID EFGRGTLTYD GFGLAWAICE HIVEEIKAPT LFPTHFHELT ALENENGNNG PKQIAGLTNF QRKGSELEDF SPNAMMPNKC
101: KEAVSKRMRE SDSHDVSRGT TRARQFLRDF TLHQGAHNHP EREEETEAGG DVEVLPKSL

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.