Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g069230.2.1 | Tomato | cytosol | 98.3 | 98.3 |
| CDY40145 | Canola | cytosol, extracellular, plastid | 7.32 | 82.14 |
| VIT_17s0000g04170.t01 | Wine grape | cytosol | 80.7 | 80.53 |
| KRH03809 | Soybean | nucleus | 77.73 | 77.81 |
| Bra028327.1-P | Field mustard | extracellular, vacuole | 13.15 | 75.15 |
| PGSC0003DMT400021697 | Potato | cytosol, extracellular, nucleus | 16.01 | 75.12 |
| AT3G18524.1 | Thale cress | nucleus | 72.85 | 73.32 |
| Bra001709.1-P | Field mustard | nucleus | 72.75 | 73.21 |
| CDX82340 | Canola | nucleus | 72.64 | 73.11 |
| CDY52899 | Canola | nucleus | 72.64 | 73.11 |
| GSMUA_Achr6P13490_001 | Banana | cytosol | 50.69 | 72.53 |
| PGSC0003DMT400021699 | Potato | cytosol | 12.09 | 71.7 |
| GSMUA_Achr6P13480_001 | Banana | cytosol | 19.09 | 70.04 |
| Os05t0274200-01 | Rice | cytosol | 69.25 | 69.32 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 68.5 | 68.58 |
| EER99643 | Sorghum | nucleus | 68.4 | 68.47 |
| Zm00001d022028_P005 | Maize | nucleus | 64.05 | 67.87 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 68.29 | 67.15 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 68.61 | 67.12 |
| HORVU1Hr1G030930.22 | Barley | plastid | 65.85 | 62.29 |
| PGSC0003DMT400032552 | Potato | cytosol, peroxisome, plastid | 12.83 | 28.61 |
| PGSC0003DMT400057653 | Potato | plastid | 8.59 | 11.71 |
| PGSC0003DMT400001555 | Potato | cytosol | 1.27 | 6.09 |
Protein Annotations
Description
Mismatch repair protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004071]
Coordinates
chr6:-:50967837..50976112
Molecular Weight (calculated)
105721.0 Da
IEP (calculated)
6.330
GRAVY (calculated)
-0.311
Length
943 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKFEEQGK LPELKLDARQ AQGFLSFFKT LPKDVRAVRL FDRRDYYTAH GDDATFIAKT YYHTTTALRQ LGNGVGALSS VSVSRNMFET IARDILLERM
101: DRTLELYEGS GSNWKLVKSG TPGNFGSFED ILFANNEMQD SPAIVALAPK FDQNGCTVGL GYVDITKRVL GLAEFLDDSH FTNLESALVA LGCRECLVPT
201: ETGKSSESRP LYDAISRCGV MVTERKKTEF KGRDLVQDLG RLVKGSVEPV RDLVSSFECA AGALGCILSY AELLADESNY GNFTVKQYNL NSYMRLDSAA
301: MRALNVMESK SDANKIFSLF GLMNRTCTAG MGKRLLHMWL KQPLLDVDEI NCRLDLVQAF VEDAALRQDL RQHLKRISDI ERLTHNLERK RASLLHVVKL
401: YQSGIRIPYI KSVLERYDGQ FAPLIRERYI DSLEKWSDDN HLNKFIALVE TAVDLDQLEN GEYMISSAYD SNLSALKDEQ ETLEQQIHNL HKQTANDLDL
501: PIDKSLKLDK GTQFGHVFRI TKKEEPKVRR QLNSHYIVLE TRKDGVKFTN TKLKKLGDRY QKILDEYKSC QKELVARVVQ TVASFSEVFE GLAGSLSELD
601: VLLSFADLAS SCPTAYSRPN ISPPDTGDII LEGCRHPCVE AQDWVNFIPN DCRLVRGESW FQIITGPNMG GKSTYIRQVG VNVLMAQVGS FVPCDNATIS
701: IRDCIFARVG AGDCQLKGVS TFMQEMLETA SILKGATNRS LIIIDELGRG TSTYDGFGLA WAICEHIVEE IKAPTLFATH FHELTALANE NGNNGHKQIA
801: GVANFHVSAH IDSSSRKLTM LYKVQPGACD QSFGIHVAEF ANFPQSVVAL AREKASELED FSPNAMMPTD SKKAVSKRKR EFDPHDVSRG TARARQFLQD
901: FTQLPLDKMD LKQALQQLSQ MKTDLEKNAV DSQWLQQFFS SSD
101: DRTLELYEGS GSNWKLVKSG TPGNFGSFED ILFANNEMQD SPAIVALAPK FDQNGCTVGL GYVDITKRVL GLAEFLDDSH FTNLESALVA LGCRECLVPT
201: ETGKSSESRP LYDAISRCGV MVTERKKTEF KGRDLVQDLG RLVKGSVEPV RDLVSSFECA AGALGCILSY AELLADESNY GNFTVKQYNL NSYMRLDSAA
301: MRALNVMESK SDANKIFSLF GLMNRTCTAG MGKRLLHMWL KQPLLDVDEI NCRLDLVQAF VEDAALRQDL RQHLKRISDI ERLTHNLERK RASLLHVVKL
401: YQSGIRIPYI KSVLERYDGQ FAPLIRERYI DSLEKWSDDN HLNKFIALVE TAVDLDQLEN GEYMISSAYD SNLSALKDEQ ETLEQQIHNL HKQTANDLDL
501: PIDKSLKLDK GTQFGHVFRI TKKEEPKVRR QLNSHYIVLE TRKDGVKFTN TKLKKLGDRY QKILDEYKSC QKELVARVVQ TVASFSEVFE GLAGSLSELD
601: VLLSFADLAS SCPTAYSRPN ISPPDTGDII LEGCRHPCVE AQDWVNFIPN DCRLVRGESW FQIITGPNMG GKSTYIRQVG VNVLMAQVGS FVPCDNATIS
701: IRDCIFARVG AGDCQLKGVS TFMQEMLETA SILKGATNRS LIIIDELGRG TSTYDGFGLA WAICEHIVEE IKAPTLFATH FHELTALANE NGNNGHKQIA
801: GVANFHVSAH IDSSSRKLTM LYKVQPGACD QSFGIHVAEF ANFPQSVVAL AREKASELED FSPNAMMPTD SKKAVSKRKR EFDPHDVSRG TARARQFLQD
901: FTQLPLDKMD LKQALQQLSQ MKTDLEKNAV DSQWLQQFFS SSD
001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL
Arabidopsis Description
MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.