Factsheet for GSMUA_Achr6P13490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022028_P005	Maize	nucleus	71.32	52.81
VIT_17s0000g04170.t01	Wine grape	cytosol	74.05	51.64
Solyc06g069230.2.1	Tomato	cytosol	73.14	51.11
KRH03809	Soybean	nucleus	72.84	50.96
Os05t0274200-01	Rice	cytosol	72.53	50.74
PGSC0003DMT400010422	Potato	cytosol	72.53	50.69
TraesCS1D01G131600.3	Wheat	nucleus	71.93	50.32
EER99643	Sorghum	nucleus	71.62	50.11
TraesCS1A01G135100.1	Wheat	nucleus	71.78	49.32
TraesCS1B01G149700.3	Wheat	nucleus	71.78	49.07
AT3G18524.1	Thale cress	nucleus	67.53	47.49
Bra001709.1-P	Field mustard	nucleus	67.37	47.39
CDX82340	Canola	nucleus	67.37	47.39
CDY52899	Canola	nucleus	67.07	47.17
HORVU1Hr1G030930.22	Barley	plastid	68.89	45.54
CDY40145	Canola	cytosol, extracellular, plastid	3.49	27.38
GSMUA_AchrUn_...	Banana	plastid	8.04	14.1
GSMUA_Achr6P29470_001	Banana	mitochondrion	8.5	12.5
GSMUA_Achr8P08020_001	Banana	cytosol	8.8	11.74
GSMUA_AchrUn_...	Banana	nucleus	12.29	11.71
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	5.61	11.6
GSMUA_Achr6P29480_001	Banana	cytosol	6.37	11.32
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	21.7	11.22
GSMUA_Achr8P08030_001	Banana	cytosol	4.86	10.74
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	15.63	9.25
Bra028327.1-P	Field mustard	extracellular, vacuole	2.28	9.09
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	3.03	8.81
GSMUA_Achr8P12760_001	Banana	cytosol	2.43	8.51
GSMUA_Achr1P01820_001	Banana	plastid	2.88	8.09
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	5.01	5.51
GSMUA_Achr7P04320_001	Banana	plastid	7.28	5.27
GSMUA_Achr1P01780_001	Banana	nucleus	1.37	4.86
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.76	2.24
GSMUA_Achr6P13480_001	Banana	cytosol	0.61	1.56
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	0.46	1.49
PGSC0003DMT400021699	Potato	cytosol	0.3	1.26

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	ncoils:Coil
InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983
GO:GO:0032300	EnsemblPlantsGene:GSMUA_Achr6G13490_001	EnsemblPlants:GSMUA_Achr6P13490_001	EnsemblPlants:GSMUA_Achr6T13490_001	InterPro:IPR016151	InterPro:IPR036678
UniProt:M0T6P7	InterPro:Msh2	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	PANTHER:PTHR11361	PANTHER:PTHR11361:SF35	SMART:SM00533
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI000295859E	SEG:seg	:	:

Description

DNA mismatch repair protein MSH2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13490_001]

Coordinates

chr6:-:8973341..8978141

Molecular Weight (calculated)

74873.0 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.338

Length

659 amino acids

Sequence
(BLAST)

001: MTASDSPAAN KLPELKLDAR QAQGFISFFK ALPADPRAVR FFDRRDYYTV HGENATFIAR TYYHTTTALR QLGSGSEGIS SVSVNKNMFE AIARDLLLER
101: TDHTLELYEG SGSNWNLTKT GTPGNVGSFE DILFANNDMQ DSPVTVALFP VFRENQCTVG LGFVDMTKRK LGTVEFLDDS QFTNTESVLI ALGCKECLLP
201: VECGRSTELK PLYNSLSRCN VLLTERKKYE FKSRDLVQDL GRIIRGSYNL DNYMRLDYAA MRALNVLESK TDLNKNFSLF GLMNRTCTAG MGKRLLNRWL
301: KQPLLDVHEI IHRLDLVQAF VEDPELRQGL RQHLKRISDI ERLTHALKKK TANLPPVIKL YQSSIRLPYI RDVLEHYEGQ FSSLIRKRYS EPLNFWMDEE
401: RLNKFIALVE VSVDLDQLEN GEYMISPGYD PNLAALKNEL TAIEQQINDL HKQAANDLDL SLDKALKLEK GTQFGHAFRI TKKEEQKVRK KLTNHYIVLE
501: TRKDGIKFTN TKLKKLGDQY QKLLSDYTSC QKGIVARVVD TSATFSEVFE AVAAILAEID VLLSFADLAT SCPIPYVRPD ITPSDQGDII LEGSRHPCVE
601: AQDGVNFIPN DCKLVRGKSW FQIITGPNMG GKSTFIRQLK ITSYMTDLHQ VVWNLKPRM

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.