Factsheet for GSMUA_Achr1P01790_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0509000-01	Rice	cytosol, nucleus	67.71	27.86
TraesCS1B01G200700.1	Wheat	plastid	71.75	19.32
TraesCS1A01G179700.1	Wheat	plastid	71.3	19.11
TraesCS1D01G178000.1	Wheat	plastid	70.85	18.99
OQU91528	Sorghum	plastid	69.06	18.53
HORVU1Hr1G047640.7	Barley	plastid	71.3	18.21
AT5G54090.1	Thale cress	plastid	64.57	18.09
CDY41773	Canola	plastid	64.57	17.98
Bra022693.1-P	Field mustard	plastid	64.13	17.83
CDY28796	Canola	plastid	64.13	17.83
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	63.68	17.36
Solyc03g080010.2.1	Tomato	plastid	64.13	17.31
KRH72584	Soybean	plastid	60.99	17.22
GSMUA_Achr6P13480_001	Banana	cytosol	19.73	17.12
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	40.81	16.82
Zm00001d013887_P002	Maize	plastid	52.47	13.72
GSMUA_Achr1P01780_001	Banana	nucleus	8.07	9.73
GSMUA_Achr6P29480_001	Banana	cytosol	16.14	9.7
GSMUA_Achr7P04320_001	Banana	plastid	36.77	9.01
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	21.97	8.18
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	10.76	7.52
GSMUA_Achr8P08020_001	Banana	cytosol	16.14	7.29
GSMUA_AchrUn_...	Banana	nucleus	18.39	5.92
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	19.73	3.95
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	18.83	3.29
GSMUA_Achr1P01820_001	Banana	plastid	0.9	0.85
GSMUA_Achr6P13490_001	Banana	cytosol	2.24	0.76
GSMUA_Achr8P08030_001	Banana	cytosol	0.9	0.67
KRH16964	Soybean	cytosol, nucleus	0.45	0.6
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.45	0.44
GSMUA_AchrUn_...	Banana	plastid	0.45	0.27
GSMUA_Achr6P29470_001	Banana	mitochondrion	0.45	0.22
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	InterPro:DNA_mismatch_repair_MutS_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr1G01790_001
EnsemblPlants:GSMUA_Achr1P01790_001	EnsemblPlants:GSMUA_Achr1T01790_001	UniProt:M0RW87	InterPro:P-loop_NTPase	PFAM:PF00488	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI0002953B58	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G01790_001]

Coordinates

chr1:-:1464403..1474652

Molecular Weight (calculated)

24970.0 Da

IEP (calculated)

6.299

GRAVY (calculated)

0.063

Length

223 amino acids

Sequence
(BLAST)

001: MCKFSFYQHK TLFNLRNSLH FLVYNHEIIE QRFLILVDNC LYVLASEPVK IPWFDGIYAD IGDEQSLTQS LSTFSGHLRQ IGAIRSQSTH KSLVLLDEVG
101: AGTNPLEGAA LGMSILESFA ETGSFLTIAT THHGELKMLK YRNDAFENAC VEFDELSLKP TYKILWGVPG RSNAINIAER LGLNFVIVDG ARKLLGTANA
201: EINEVNYLNH YIATMVATCK QCF

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.