Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P13480_001 | Banana | cytosol | 10.4 | 28.02 |
GSMUA_Achr6P29480_001 | Banana | cytosol | 13.73 | 25.61 |
GSMUA_Achr8P08020_001 | Banana | cytosol | 16.33 | 22.87 |
GSMUA_Achr1P01790_001 | Banana | mitochondrion | 5.92 | 18.39 |
GSMUA_Achr1P01810_001 | Banana | extracellular, plasma membrane | 6.65 | 14.42 |
GSMUA_Achr8P12780_001 | Banana | cytosol, nucleus, plasma membrane | 12.14 | 14.02 |
GSMUA_Achr1P01780_001 | Banana | nucleus | 3.47 | 12.97 |
GSMUA_Achr5P24510_001 | Banana | nucleus, plastid | 23.41 | 12.71 |
GSMUA_Achr6P13490_001 | Banana | cytosol | 11.71 | 12.29 |
CDX86902 | Canola | cytosol | 2.17 | 12.1 |
GSMUA_Achr7P13290_001 | Banana | cytosol, plastid | 18.5 | 11.49 |
GSMUA_Achr8P08030_001 | Banana | cytosol | 4.48 | 10.4 |
GSMUA_Achr7P04320_001 | Banana | plastid | 10.26 | 7.8 |
GSMUA_Achr6P29470_001 | Banana | mitochondrion | 4.19 | 6.47 |
GSMUA_Achr8P12770_001 | Banana | extracellular, nucleus, plasma membrane | 1.73 | 5.29 |
GSMUA_AchrUn_... | Banana | plastid | 1.45 | 2.66 |
GSMUA_Achr1P01820_001 | Banana | plastid | 0.14 | 0.43 |
GSMUA_Achr8P12760_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.10.1420.10 | MapMan:14.7.1.2 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_core |
InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | EnsemblPlantsGene:GSMUA_AchrUn_randomG05200_001 | EnsemblPlants:GSMUA_AchrUn_randomP05200_001 | EnsemblPlants:GSMUA_AchrUn_randomT05200_001 |
UniProt:M0U6I2 | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF05192 | PIRSF:PIRSF037677 | ScanProsite:PS00486 |
PANTHER:PTHR11361 | PANTHER:PTHR11361:SF122 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
UniParc:UPI000295D5AA | SEG:seg | : | : | : | : |
Description
DNA mismatch repair protein Msh3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05200_001]
Coordinates
chrchrUn_random:+:20588444..20600166
Molecular Weight (calculated)
76411.6 Da
IEP (calculated)
6.998
GRAVY (calculated)
0.003
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHTCTAYGS RLFKHWVTHP LCDRNSISAR LDAVSEIAES MGSCKGSQVE MELGVENHSD AFRQSELSEV MSSVLTMLGK SPDVQRGISR IFHRTSTVAE
101: FIGVIHAILI SGKQLQKLYV ESDAGYGASQ QKKVKSALLR RLISTAASPT VMGHAVKLLS SLNKDAADQG DMLNLFVSCT NQFPEIGRGR IAVQLAKEKL
201: DLLIVQYRKQ LGVRNLEFMG VSGKTHMIEL PADLRVPSNW VKVSSTKRTI RYHPPEVLAA LDELLLAREE LAVACRTTWD NFLMSFGKYY PQFQAAVQAL
301: AALDCLHSLA ILSRNENYVR PVFVHDDEPS QIHISSGRHP VLESILGDNF VPNDTELHAD GEYCQIVTGP NMGGKSCYIR QVALIAIMAQ VGSFVPASLV
401: KMHVLDGIYT RMGASDSIQQ GISTFFEELT EASQILHNCS SCSLVIVDEL GRGTSTYDGV AIAYATLQYF LKQKKCIVLF VTHYPKILDI QKEFKSSVGA
501: YHLCHKEVTF LYKLVTGASD KSFGLNVAKL AQLPASCIAR AAVMAAKLES EVSEHLGSKE GRLIKVSSQN ENLDHSSELS EFCKEQEDFA DLAKACHKVL
601: FYMMSALNEA EPVNMLYICS GPQMLIMELI CKRKVHLRKV MTLEPNLQLT AVVLAQESWP ISELGAPINE FTTPRLSELA EVKMSPTVSC CS
101: FIGVIHAILI SGKQLQKLYV ESDAGYGASQ QKKVKSALLR RLISTAASPT VMGHAVKLLS SLNKDAADQG DMLNLFVSCT NQFPEIGRGR IAVQLAKEKL
201: DLLIVQYRKQ LGVRNLEFMG VSGKTHMIEL PADLRVPSNW VKVSSTKRTI RYHPPEVLAA LDELLLAREE LAVACRTTWD NFLMSFGKYY PQFQAAVQAL
301: AALDCLHSLA ILSRNENYVR PVFVHDDEPS QIHISSGRHP VLESILGDNF VPNDTELHAD GEYCQIVTGP NMGGKSCYIR QVALIAIMAQ VGSFVPASLV
401: KMHVLDGIYT RMGASDSIQQ GISTFFEELT EASQILHNCS SCSLVIVDEL GRGTSTYDGV AIAYATLQYF LKQKKCIVLF VTHYPKILDI QKEFKSSVGA
501: YHLCHKEVTF LYKLVTGASD KSFGLNVAKL AQLPASCIAR AAVMAAKLES EVSEHLGSKE GRLIKVSSQN ENLDHSSELS EFCKEQEDFA DLAKACHKVL
601: FYMMSALNEA EPVNMLYICS GPQMLIMELI CKRKVHLRKV MTLEPNLQLT AVVLAQESWP ISELGAPINE FTTPRLSELA EVKMSPTVSC CS
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.