Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX95680 Canola cytosol 70.97 66.17
CDY41773 Canola plastid 87.1 13.48
CDY28796 Canola plastid 87.1 13.47
GSMUA_Achr1P01780_001 Banana nucleus 7.26 4.86
CDX91525 Canola plastid 24.19 3.38
CDY16386 Canola plastid 24.19 2.54
CDY59530 Canola endoplasmic reticulum, nucleus, peroxisome 15.32 2.42
CDX76574 Canola cytosol, peroxisome, plasma membrane 15.32 2.4
CDY52899 Canola nucleus 16.94 2.24
GSMUA_AchrUn_... Banana nucleus 12.1 2.17
CDX77432 Canola mitochondrion 19.35 2.14
CDX82340 Canola nucleus 16.13 2.13
CDY49227 Canola mitochondrion 18.55 2.05
CDY65220 Canola cytosol 9.68 1.5
CDX92716 Canola plastid 12.9 1.47
CDY19637 Canola cytosol 9.68 1.41
CDY50199 Canola plastid 12.1 1.4
CDX91808 Canola mitochondrion, nucleus, plastid 14.52 1.36
CDX90956 Canola plastid 14.52 1.35
CDY47171 Canola mitochondrion, nucleus 11.29 1.28
CDY25338 Canola plastid 11.29 1.27
CDY40145 Canola cytosol, extracellular, plastid 0.81 1.19
CDY59535 Canola cytosol 0.0 0.0
GSMUA_AchrUn_... Banana plastid 0.0 0.0
CDX76575 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDX86902EnsemblPlantsGene:GSBRNA2T00145700001Gene3D:3.40.50.300ncoils:CoilPANTHER:PTHR11361PANTHER:PTHR11361:SF81
ProteinID:CDX86902ProteinID:CDX86902.1UniParc:UPI0004EED2B6MapMan:35.2::
Description
BnaC03g51720D
Coordinates
chrLK031848:-:183563..184261
Molecular Weight (calculated)
14196.2 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.107
Length
124 amino acids
Sequence
(BLAST)
001: MAILESFAES GSLFTMATTH HGELKMLKYR FYILHSCPIL ALENACMEFD DLNLKPTFKI LWGVPGRPNA INIAERLGLP CDIINSARGL YGSASAEINE
101: VILDMERYKQ DYQRLLNESH RYIR
Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)
001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA
Arabidopsis Description
DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.