CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035777.1-P	Field mustard	cytosol	98.94	99.64
CDY65220	Canola	cytosol	89.31	94.76
AT3G20475.1	Thale cress	cytosol	86.13	90.83
VIT_19s0090g00670.t01	Wine grape	cytosol	69.57	74.65
KRH14375	Soybean	cytosol	66.16	69.33
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	41.48	69.08
GSMUA_Achr6P29480_001	Banana	cytosol	30.08	69.0
KRH73763	Soybean	cytosol	65.45	68.77
HORVU1Hr1G066830.9	Barley	cytosol	48.3	65.03
OQU78247	Sorghum	cytosol	58.99	63.95
TraesCS1D01G316200.1	Wheat	cytosol	60.87	63.4
TraesCS1B01G328200.1	Wheat	cytosol	39.48	63.4
Os05t0498300-01	Rice	cytosol	60.16	63.29
TraesCS1A01G315900.1	Wheat	cytosol	60.52	62.96
Zm00001d000329_P002	Maize	cytosol	33.49	62.36
Solyc10g018540.1.1	Tomato	cytosol	24.79	61.52
GSMUA_Achr6P29470_001	Banana	mitochondrion	28.91	54.91
CDY40145	Canola	cytosol, extracellular, plastid	3.53	35.71
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	16.45	17.81
CDY52899	Canola	nucleus	19.51	17.72
CDX76574	Canola	cytosol, peroxisome, plasma membrane	16.45	17.68
CDX82340	Canola	nucleus	19.39	17.61
CDY50199	Canola	plastid	19.74	15.63
CDX92716	Canola	plastid	19.86	15.48
CDX91808	Canola	mitochondrion, nucleus, plastid	19.74	12.72
CDX90956	Canola	plastid	19.74	12.57
CDY47171	Canola	mitochondrion, nucleus	15.28	11.89
CDY25338	Canola	plastid	14.92	11.55
CDY41773	Canola	plastid	9.75	10.36
CDY28796	Canola	plastid	9.64	10.22
CDY59535	Canola	cytosol	1.65	10.07
CDX76575	Canola	cytosol	1.65	10.07
CDX77432	Canola	mitochondrion	13.16	9.98
CDX91525	Canola	plastid	10.11	9.7
CDX86902	Canola	cytosol	1.41	9.68
CDY49227	Canola	mitochondrion	12.69	9.61
CDX95680	Canola	cytosol	1.29	8.27
CDY16386	Canola	plastid	10.11	7.28

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.30.420.110	Gene3D:3.40.50.300	GO:A0A078G3R0	UniProt:A0A078G3R0
EnsemblPlants:CDY19637	ProteinID:CDY19637	ProteinID:CDY19637.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00009311001	InterPro:IPR036678	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EE72F5

Description

BnaA05g20450DBnaA05g20450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3R0]

Coordinates

chrLK032098:-:693332..700524

Molecular Weight (calculated)

96300.2 Da

IEP (calculated)

4.847

GRAVY (calculated)

0.011

Length

851 amino acids

Sequence
(BLAST)

001: MEETDETETE SQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LVNMVKYQAK PLVIYTSTKS EDSFVSALQK SDGTEEDTMV KQVKSSTFSY
101: EQAWHRLVYL RVTGMDEGLN IKERVCYLSS MMDVGSEVQV RVSGGLLAIL ESERIVDTLE QNESGTASIA IDSVMEVPLN KFLKLDAAAH EALQIFQIDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAVSFFLRLM PSRIGVGNQA DDIFAGYTEI CEGHIPFAQE SVFSLHAMCE
301: LVCRSCRFFI SCTHLVLLNI SFLCENKKFN SPTSLCTSND WTAFMKSIGA LLHVNKIFEV GVSESLREHM RRFNLDIIEK AGLCISTELD YVYELVLGVI
401: DVTRSKEKGY QTLVKDGFCA ELDELRQIYE GLPEFLQEVS SMEFEHLPHL HKENLPPCIV YIQQIGYLMC IFGEKLDETA LDRINEFEFA FSDLDGETQR
501: FFYHTPKTRE LDNVLGDIYH KILDMERAII RDLLSHTLLF SAHLLKAVNF VAELDCILSL ACVAHQNKYV RPVLTMESLL DIRNGRHVLQ EMAVDTFIPN
601: DTEINDNGRI HIITGPNYSG KSIYVKQVAL IVFLSHIGSF VPADAATVGL TDRIFCAMGS KFMTAEQSTF MIDLHQVGMM LRQATSRSLC LLDEFGKGTL
701: TEDGIGLLGG TISHFASCNE PPRVLVCTHL TELLNESCLP VKIRFYTMSV LRPDTESANM EEIVFLYRLI PGQTLLSYGL HCALLAGVPE EVVKRAAIVL
801: DVFESNNNVD KLNLDNISSQ DQVFKDAVDK FMEFDISKGD IRAFFEDMFT S

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.