Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50199 | Canola | plastid | 94.6 | 96.09 |
| Bra019156.1-P | Field mustard | plastid | 94.6 | 95.3 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 84.71 | 85.57 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 64.65 | 63.55 |
| KRG91481 | Soybean | plastid | 61.08 | 62.34 |
| KRH35336 | Soybean | cytosol | 23.81 | 61.18 |
| Solyc03g025890.1.1 | Tomato | nucleus | 61.08 | 59.71 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 24.73 | 57.45 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 25.09 | 55.92 |
| TraesCS2D01G352400.1 | Wheat | cytosol | 48.72 | 54.62 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 52.29 | 54.23 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 43.04 | 53.84 |
| EES11671 | Sorghum | plastid | 53.75 | 53.36 |
| TraesCS2B01G372300.1 | Wheat | plastid | 53.21 | 52.63 |
| CDY40145 | Canola | cytosol, extracellular, plastid | 3.57 | 46.43 |
| Zm00001d026647_P005 | Maize | nucleus | 53.3 | 43.5 |
| CDX82340 | Canola | nucleus | 19.23 | 22.41 |
| CDY52899 | Canola | nucleus | 19.14 | 22.31 |
| CDY65220 | Canola | cytosol | 15.38 | 20.95 |
| CDX76574 | Canola | cytosol, peroxisome, plasma membrane | 15.02 | 20.71 |
| CDX90956 | Canola | plastid | 25.27 | 20.64 |
| CDX91808 | Canola | mitochondrion, nucleus, plastid | 24.82 | 20.51 |
| CDY59530 | Canola | endoplasmic reticulum, nucleus, peroxisome | 14.74 | 20.48 |
| CDY19637 | Canola | cytosol | 15.48 | 19.86 |
| CDY25338 | Canola | plastid | 19.41 | 19.27 |
| CDY47171 | Canola | mitochondrion, nucleus | 19.14 | 19.12 |
| CDX95680 | Canola | cytosol | 1.83 | 15.04 |
| CDY41773 | Canola | plastid | 10.53 | 14.36 |
| CDY28796 | Canola | plastid | 10.53 | 14.34 |
| CDX77432 | Canola | mitochondrion | 13.83 | 13.46 |
| CDY49227 | Canola | mitochondrion | 13.83 | 13.43 |
| CDX86902 | Canola | cytosol | 1.47 | 12.9 |
| CDX91525 | Canola | plastid | 9.62 | 11.84 |
| CDY59535 | Canola | cytosol | 1.37 | 10.79 |
| CDX76575 | Canola | cytosol | 1.37 | 10.79 |
| CDY16386 | Canola | plastid | 9.34 | 8.64 |
| EES13125 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
Description
BnaC07g39740D
Coordinates
chrLK031873:-:477514..482745
Molecular Weight (calculated)
120377.0 Da
IEP (calculated)
7.027
GRAVY (calculated)
-0.193
Length
1092 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGKQKQQVIS RFFAPKPKPS PPPNQESSTP PPKISATVSF SPSKRKLLSD HLAAASPKKP KLSPHTQNPD PNLHRRFLQR FLEPPPEEES LPVTTSIKYT
0101: PLEQQVVELK SKHPDVILMV EVGYRYRFFG EDAEIAARVL GIYAHMDHSF MTASVPTFRL NVHVRRLVNA GYKIGVVKQT ETAAIKSHGA NRSGPFFRGL
0201: SGLYTKATLE AAEDISGGCV GEEGFGGQSN FLVCVVDERV DRETNKGCGL EAGFDVRVGV VGVEISTGEV VHGEFNDNFM RSGLEAVVLS LSPAELLLGQ
0301: PLSQQTEKFL LGYAGPTSNV RVERASLDRF RNDSAVDEIV SIYEDLSARN IEDDKENRVE VAGEKISCLT VHTIMNMPHL TVKALALTLR HLRQFGFERI
0401: LFEGASVRSL SSTTEMTLSA NTLQQLEVVR NNSDGSESGS LFHNMNQTLT VYGSRLLRHW VTHPLCDRNL ISARLDAVSE IVACMGSPSS SQASDELDEE
0501: SSERKIVPPE LYHVLSSVLT ALSRSPDIQR GITRIFHRTA KATEFIAVIE AILLAGKQLQ RLGIKQDCET RSMQSATVRS SLLRKLISVV SSPAVVDNAA
0601: KLLSALNKEG AARGDLLNIL ITSSNQFPEL AEARQAVLAV REKLDSLIVS YRKKLANRNL EFLEVSGITH LIEVPVDAKV PMNWVKVNST KKTIRYHPPE
0701: ILAGLDELAL ATEHLSIVNR ASWDSFLKSF GRYYTDFQAA VQALAALDCL HSLATLCRNK NYICPLFVDD SEPVEINIQS GRHPVLETIL QDNFVPNDTS
0801: LHAEGEYCQI ITGPNMGGKS CYIRQVALIS IMAQVGSFVP ASFAKLHVLD GVFTRMGATD SIQHGRSTFL EELSEASHII RTCSSRSLVI IDELGRGTST
0901: HDGVAIAYAT LHHLLVEKRC LVLFVTHYPE IAEISNSFPV SAGTYHVSYL TSQKDNGGSD HDDVTYLYKL VRGLCSRSFG FKVAQLAQIP PSCIHRAITM
1001: AANLEAEVRA RERNTSPGKP KAHAEPPESR TEESMSVLGD LFADLRCALS EDDPSKSFKL LKGAWKIAED LVARSEDQNP MHHQHFSNNA RF
0101: PLEQQVVELK SKHPDVILMV EVGYRYRFFG EDAEIAARVL GIYAHMDHSF MTASVPTFRL NVHVRRLVNA GYKIGVVKQT ETAAIKSHGA NRSGPFFRGL
0201: SGLYTKATLE AAEDISGGCV GEEGFGGQSN FLVCVVDERV DRETNKGCGL EAGFDVRVGV VGVEISTGEV VHGEFNDNFM RSGLEAVVLS LSPAELLLGQ
0301: PLSQQTEKFL LGYAGPTSNV RVERASLDRF RNDSAVDEIV SIYEDLSARN IEDDKENRVE VAGEKISCLT VHTIMNMPHL TVKALALTLR HLRQFGFERI
0401: LFEGASVRSL SSTTEMTLSA NTLQQLEVVR NNSDGSESGS LFHNMNQTLT VYGSRLLRHW VTHPLCDRNL ISARLDAVSE IVACMGSPSS SQASDELDEE
0501: SSERKIVPPE LYHVLSSVLT ALSRSPDIQR GITRIFHRTA KATEFIAVIE AILLAGKQLQ RLGIKQDCET RSMQSATVRS SLLRKLISVV SSPAVVDNAA
0601: KLLSALNKEG AARGDLLNIL ITSSNQFPEL AEARQAVLAV REKLDSLIVS YRKKLANRNL EFLEVSGITH LIEVPVDAKV PMNWVKVNST KKTIRYHPPE
0701: ILAGLDELAL ATEHLSIVNR ASWDSFLKSF GRYYTDFQAA VQALAALDCL HSLATLCRNK NYICPLFVDD SEPVEINIQS GRHPVLETIL QDNFVPNDTS
0801: LHAEGEYCQI ITGPNMGGKS CYIRQVALIS IMAQVGSFVP ASFAKLHVLD GVFTRMGATD SIQHGRSTFL EELSEASHII RTCSSRSLVI IDELGRGTST
0901: HDGVAIAYAT LHHLLVEKRC LVLFVTHYPE IAEISNSFPV SAGTYHVSYL TSQKDNGGSD HDDVTYLYKL VRGLCSRSFG FKVAQLAQIP PSCIHRAITM
1001: AANLEAEVRA RERNTSPGKP KAHAEPPESR TEESMSVLGD LFADLRCALS EDDPSKSFKL LKGAWKIAED LVARSEDQNP MHHQHFSNNA RF
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.