Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G352400.1 | Wheat | cytosol | 89.93 | 97.23 |
| TraesCS2B01G372300.1 | Wheat | plastid | 100.0 | 95.38 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 76.92 | 92.78 |
| EES11671 | Sorghum | plastid | 79.68 | 76.27 |
| Zm00001d026647_P005 | Maize | nucleus | 77.78 | 61.21 |
| KRH35336 | Soybean | cytosol | 22.51 | 55.76 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 58.02 | 55.0 |
| KRG91481 | Soybean | plastid | 55.46 | 54.58 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 54.23 | 52.82 |
| Solyc03g025890.1.1 | Tomato | nucleus | 55.84 | 52.64 |
| CDY50199 | Canola | plastid | 53.66 | 52.56 |
| CDX92716 | Canola | plastid | 54.23 | 52.29 |
| Bra019156.1-P | Field mustard | plastid | 53.66 | 52.12 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 19.94 | 44.68 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 20.04 | 43.06 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 11.78 | 23.4 |
| TraesCS2B01G198300.1 | Wheat | cytosol | 17.28 | 22.55 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 19.28 | 21.06 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 19.94 | 17.18 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 14.53 | 13.56 |
| TraesCS1B01G200700.1 | Wheat | plastid | 9.69 | 12.32 |
| TraesCS3B01G287700.1 | Wheat | cytosol | 9.97 | 11.88 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 9.69 | 11.11 |
| EES13125 | Sorghum | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.2 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N |
| InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf |
| InterPro:DNA_mmatch_repair_MutS_con_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf |
| InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05190 | PFAM:PF05192 |
| PIRSF:PIRSF037677 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF122 | SMART:SM00533 | SMART:SM00534 |
| SUPFAM:SSF48334 | SUPFAM:SSF52540 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS2B01G372400 | EnsemblPlants:TraesCS2B01G372400.1 | TIGR:cd03287 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:530830980..530838040
Molecular Weight (calculated)
113920.0 Da
IEP (calculated)
6.578
GRAVY (calculated)
-0.097
Length
1053 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKQPKQQVL SRFFSTKPPP PTPTAAAQAQ PAAVRRALLE PSPPGSNPSG GGGGGRGYTP LEQQVVDLKA RHPDVLLMVE VGYRFRFFGE DAAVAASVLG
0101: IVAHPDRSFL TASVPTFRLG FHVRRLVDAG HKVGVVRQTE TAAIKAAAAA RGGGGAAPFA RELSAVYTRA TIEAGAGELE GGGAPEEGSR YLVCVVDKEV
0201: DAVGREGFEV KVGVVAIEVS TGEVVHGEFM DGAARSGLEA VLLGLAPVEV ILGTPLSFPT EKLMRAYAGP ASNVRVECTS RDCFSEGGAL AELMSLFEKS
0301: EVNSPTIGND KQMEINEEDN NLRGMEGVMA MPELVAQAMA LSVRYLKGFG MERLICFGSL FRPFTANTEM SLSANALQQL EVLKNNSDGS IEGSLFQTMN
0401: NTXXXXTAFG SRLFRHWLTH PLCDRNLICA RHDAISEISE SMGSRQDSVS IRQDEGDGCC AASARSDLST ILSSVLTMLG RSLDSQRGIT RIFHCKATAK
0501: EFIGVIQAIL TAGKQLRKLV LEDTDNVSSQ HRTVHSSLLR RLISTASSSA VLANAVKLLS CLDKDAADQG DMINLLISSV DQFPEVAEGH VTVEMAKQKL
0601: DLLIVEYRKQ LGMRSLEYKT VSGTAYLIEL PVDRRVPSNW MKVNSTKKTI RYHTPEVLKN LDNLLLAKEE LAVICRKTWH KFLMDFGKYY AQFQASVESL
0701: AALDCLYSLA TLAKQNNYVQ PNFVPENEAS QIHIKDGRHP VLESLLGDNF VPNDTNLHAD GQYCQIVTGP NMGGKSCYIR QVALITIMAQ VGSFVPASSA
0801: TLHVVDGIYT RMGASDSIQQ GTSTFYEEMN EASSILQNCS SRSLVIIDEL GRGTSTHDGV AIAYATLHYL LKNKKCIVIF VTHYPKILDI QSEFEGSVGA
0901: YHVSYLSTRK LLQISDEMMG NGTETEDLGE ITFLYKLVAG ASDRSFGLNV ALLAQLPFRC IKRASVMAAK LQEEMSKRDI NKLVRLMDEP SSDGPRESSS
1001: EVGLLCAEPH QGLMEACRRI LHDMRSAQSN NDITNTLSCL KSAQEIASKM IKG
0101: IVAHPDRSFL TASVPTFRLG FHVRRLVDAG HKVGVVRQTE TAAIKAAAAA RGGGGAAPFA RELSAVYTRA TIEAGAGELE GGGAPEEGSR YLVCVVDKEV
0201: DAVGREGFEV KVGVVAIEVS TGEVVHGEFM DGAARSGLEA VLLGLAPVEV ILGTPLSFPT EKLMRAYAGP ASNVRVECTS RDCFSEGGAL AELMSLFEKS
0301: EVNSPTIGND KQMEINEEDN NLRGMEGVMA MPELVAQAMA LSVRYLKGFG MERLICFGSL FRPFTANTEM SLSANALQQL EVLKNNSDGS IEGSLFQTMN
0401: NTXXXXTAFG SRLFRHWLTH PLCDRNLICA RHDAISEISE SMGSRQDSVS IRQDEGDGCC AASARSDLST ILSSVLTMLG RSLDSQRGIT RIFHCKATAK
0501: EFIGVIQAIL TAGKQLRKLV LEDTDNVSSQ HRTVHSSLLR RLISTASSSA VLANAVKLLS CLDKDAADQG DMINLLISSV DQFPEVAEGH VTVEMAKQKL
0601: DLLIVEYRKQ LGMRSLEYKT VSGTAYLIEL PVDRRVPSNW MKVNSTKKTI RYHTPEVLKN LDNLLLAKEE LAVICRKTWH KFLMDFGKYY AQFQASVESL
0701: AALDCLYSLA TLAKQNNYVQ PNFVPENEAS QIHIKDGRHP VLESLLGDNF VPNDTNLHAD GQYCQIVTGP NMGGKSCYIR QVALITIMAQ VGSFVPASSA
0801: TLHVVDGIYT RMGASDSIQQ GTSTFYEEMN EASSILQNCS SRSLVIIDEL GRGTSTHDGV AIAYATLHYL LKNKKCIVIF VTHYPKILDI QSEFEGSVGA
0901: YHVSYLSTRK LLQISDEMMG NGTETEDLGE ITFLYKLVAG ASDRSFGLNV ALLAQLPFRC IKRASVMAAK LQEEMSKRDI NKLVRLMDEP SSDGPRESSS
1001: EVGLLCAEPH QGLMEACRRI LHDMRSAQSN NDITNTLSCL KSAQEIASKM IKG
0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F
Arabidopsis Description
MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.