Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 5
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 98.14 | 98.14 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 98.05 | 98.05 |
| HORVU2Hr1G087660.5 | Barley | plastid | 95.83 | 92.16 |
| Os04t0507000-01 | Rice | mitochondrion | 86.44 | 86.13 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 84.93 | 84.7 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 83.87 | 82.84 |
| KRG90178 | Soybean | mitochondrion | 25.18 | 63.39 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 63.48 | 62.97 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 63.83 | 62.94 |
| Bra015033.1-P | Field mustard | mitochondrion | 61.26 | 61.59 |
| CDX77432 | Canola | mitochondrion | 61.17 | 61.5 |
| CDY49227 | Canola | mitochondrion | 60.9 | 61.12 |
| AT3G24320.1 | Thale cress | mitochondrion | 60.46 | 61.0 |
| KRH33548 | Soybean | nucleus | 60.11 | 60.0 |
| KRG90177 | Soybean | cytosol | 35.11 | 58.75 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 7.54 | 16.04 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 13.56 | 14.53 |
| TraesCS2B01G198300.1 | Wheat | cytosol | 10.37 | 14.5 |
| TraesCS1B01G200700.1 | Wheat | plastid | 10.46 | 14.25 |
| TraesCS2B01G372300.1 | Wheat | plastid | 13.83 | 14.13 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 11.08 | 12.97 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 14.01 | 12.93 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 10.2 | 12.53 |
| TraesCS3B01G287700.1 | Wheat | cytosol | 7.27 | 9.28 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N |
| InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | GO:GO:0000002 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030983 | GO:GO:0032042 |
| GO:GO:0042651 | InterPro:IPR000305 | InterPro:IPR016151 | InterPro:IPR035901 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF01541 | PFAM:PF01624 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 | SMART:SM00465 |
| SMART:SM00534 | SUPFAM:SSF52540 | SUPFAM:SSF55271 | SUPFAM:SSF82771 | EnsemblPlantsGene:TraesCS2B01G379900 | EnsemblPlants:TraesCS2B01G379900.1 |
| TIGR:cd03243 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:543529416..543562915
Molecular Weight (calculated)
124409.0 Da
IEP (calculated)
7.768
GRAVY (calculated)
-0.097
Length
1128 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHRLLASSVV AAAPRWLPVA DSILRRRRSC RSPLPILLFN RSWSKPRKVS RSISMVSSKV NKQGNLCNEG MLSHIMWWKE RMESCRKPSS VQLTQRLVYS
0101: NILGLDPTLR NGSLKDGTLN MEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEHAGLN PFGGLRSDSI PKAGCPIMNL RQTLDDLTRC GYSVCIVEEI
0201: QGPTQARARK GRFISGHAHP GSPYVFGLAE VDHDLEFPDP MPVVGISRSA KGYCLISVLE TMKTYSAEEG LTEEAIVTKL RICRYHHLYL HSSLRNNSSG
0301: TSRWGEFGEG GLLWGECNGK SFDWFDGSPI DELLCKVREI YGLDEKTSFR NVTISLEGRP QPLYLGTATQ IGVIPTEGIP SLPKMLLPPN CAGLPSMYIR
0401: DLLLNPPSFD VASAIQEACR LMCSITCSIP EFTCIPSAKL VRLLESKEVN HIEFCRIKNV LDEIMLMNGN TELSAIQNKL LEPASVVTGL KVDADILIKE
0501: CRFISKRIGE VISLAGESDQ AITSSEYIPK EFFNDMESSW KGRVKRVHAE EEFANVDVAA QALSTAVTED FLPIIVRVKA VMSSHGSSKG EISYAKEHGA
0601: VWFKGRRLTP TVWANTPGEE QIKQLKPAID SKGRRVGEEW FTTTKVENAL ARYHEACDNA KGKVLELLRG LSSELQDKIN ILVFCSTLLI ITKALFGHVS
0701: EGLRRGWVLP AIYPLSKDYS MEESSSEMDL LRLFPYWLDT NQGNAILNDV NMRSLFILTG PNGGGKSSML RSVCAAALLG VCGLMVPAAS AVIPHFDSIM
0801: LHMKAYDSPA DGKSSFQIEM SEIRSLVSRA TGRSLVLIDE ICRGTETAKG TCIAGSIIER LDDVGCLGIV STHLHGIFDL PLSLNNTDFK AMGTEVVNGC
0901: IQPTWRLMDG ICRESLAFQT ARKEGMPDLI IKRAEELYLT MSRSNKQTSS TANNGPSVGY SNVNGLVDMP DGLGNMFEPP LGAFGLLRKD VESIVTAICK
1001: DKLLDLYNKR SISELVEVVC VTVGAREQPP PSTVGRSSIY IIIRRDNKLY VGQTDDLMGR LGAHRSKEGM QDATILYIMV PGKSIACQLE TLLINQLPSK
1101: GFKLTNKADG KHRNFGMSVT SGEAMAAH
0101: NILGLDPTLR NGSLKDGTLN MEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEHAGLN PFGGLRSDSI PKAGCPIMNL RQTLDDLTRC GYSVCIVEEI
0201: QGPTQARARK GRFISGHAHP GSPYVFGLAE VDHDLEFPDP MPVVGISRSA KGYCLISVLE TMKTYSAEEG LTEEAIVTKL RICRYHHLYL HSSLRNNSSG
0301: TSRWGEFGEG GLLWGECNGK SFDWFDGSPI DELLCKVREI YGLDEKTSFR NVTISLEGRP QPLYLGTATQ IGVIPTEGIP SLPKMLLPPN CAGLPSMYIR
0401: DLLLNPPSFD VASAIQEACR LMCSITCSIP EFTCIPSAKL VRLLESKEVN HIEFCRIKNV LDEIMLMNGN TELSAIQNKL LEPASVVTGL KVDADILIKE
0501: CRFISKRIGE VISLAGESDQ AITSSEYIPK EFFNDMESSW KGRVKRVHAE EEFANVDVAA QALSTAVTED FLPIIVRVKA VMSSHGSSKG EISYAKEHGA
0601: VWFKGRRLTP TVWANTPGEE QIKQLKPAID SKGRRVGEEW FTTTKVENAL ARYHEACDNA KGKVLELLRG LSSELQDKIN ILVFCSTLLI ITKALFGHVS
0701: EGLRRGWVLP AIYPLSKDYS MEESSSEMDL LRLFPYWLDT NQGNAILNDV NMRSLFILTG PNGGGKSSML RSVCAAALLG VCGLMVPAAS AVIPHFDSIM
0801: LHMKAYDSPA DGKSSFQIEM SEIRSLVSRA TGRSLVLIDE ICRGTETAKG TCIAGSIIER LDDVGCLGIV STHLHGIFDL PLSLNNTDFK AMGTEVVNGC
0901: IQPTWRLMDG ICRESLAFQT ARKEGMPDLI IKRAEELYLT MSRSNKQTSS TANNGPSVGY SNVNGLVDMP DGLGNMFEPP LGAFGLLRKD VESIVTAICK
1001: DKLLDLYNKR SISELVEVVC VTVGAREQPP PSTVGRSSIY IIIRRDNKLY VGQTDDLMGR LGAHRSKEGM QDATILYIMV PGKSIACQLE TLLINQLPSK
1101: GFKLTNKADG KHRNFGMSVT SGEAMAAH
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.