Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33548 | Soybean | nucleus | 88.28 | 52.65 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 9.35 | 41.18 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 9.35 | 41.18 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 68.4 | 40.3 |
| Bra015033.1-P | Field mustard | mitochondrion | 62.91 | 37.79 |
| CDX77432 | Canola | mitochondrion | 62.91 | 37.79 |
| AT3G24320.1 | Thale cress | mitochondrion | 62.61 | 37.75 |
| CDY49227 | Canola | mitochondrion | 62.76 | 37.63 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 62.91 | 37.29 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 60.39 | 35.99 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 60.09 | 35.46 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 58.75 | 35.11 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 58.61 | 35.02 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 58.31 | 34.84 |
| Os04t0507000-01 | Rice | mitochondrion | 58.46 | 34.81 |
| HORVU2Hr1G087660.5 | Barley | plastid | 58.9 | 33.84 |
| KRH35336 | Soybean | cytosol | 13.06 | 20.71 |
| KRH20465 | Soybean | cytosol | 3.71 | 12.32 |
| KRH72584 | Soybean | plastid | 13.06 | 11.14 |
| KRH14375 | Soybean | cytosol | 13.35 | 11.08 |
| KRH73763 | Soybean | cytosol | 13.06 | 10.86 |
| KRH28123 | Soybean | cytosol | 12.46 | 10.58 |
| KRH50031 | Soybean | plastid | 13.2 | 9.74 |
| KRG91481 | Soybean | plastid | 15.28 | 9.63 |
| KRH16965 | Soybean | cytosol, mitochondrion, nucleus, plastid | 7.72 | 9.61 |
| KRH03809 | Soybean | nucleus | 13.35 | 9.55 |
| KRH16964 | Soybean | cytosol, nucleus | 2.23 | 9.04 |
| KRG96523 | Soybean | plastid | 16.17 | 8.56 |
| KRH39265 | Soybean | mitochondrion | 12.17 | 7.6 |
| KRH48416 | Soybean | cytosol | 12.17 | 7.26 |
| KRH33415 | Soybean | cytosol, extracellular, plastid | 0.3 | 1.63 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.15 | 0.83 |
| KRG88725 | Soybean | nucleus | 0.3 | 0.7 |
| KRG90178 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.50.300 | EMBL:ACUP02012557 | InterPro:DNA_mismatch_repair_MutS/MSH | InterPro:DNA_mismatch_repair_MutS_C | InterPro:GIY-YIG_endonuc_sf |
| EnsemblPlantsGene:GLYMA_20G073400 | GO:GO:0000166 | GO:GO:0000404 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003684 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008094 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030983 |
| GO:GO:0032300 | GO:GO:0043570 | InterPro:IPR035901 | UniProt:K7N235 | EnsemblPlants:KRG90177 | ProteinID:KRG90177 |
| ProteinID:KRG90177.1 | InterPro:P-loop_NTPase | PFAM:PF00488 | PIRSF:PIRSF037677 | ScanProsite:PS00486 | PANTHER:PTHR11361 |
| PANTHER:PTHR11361:SF82 | SMART:SM00534 | SUPFAM:SSF52540 | SUPFAM:SSF82771 | UniParc:UPI00023DDF55 | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:-:25893792..25903958
Molecular Weight (calculated)
74761.2 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.138
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFCRIKNVL DEILLMNKTS ELNDILKHLI DPTWVATGLE IDFETLVAGC EVASTKIGDI ISLDGGNDQK INSFSLIPHE FFEDIESKWK GRIKRIHIDD
101: VFTAVEKAAE ALHIAVTEDF VPILSRIKAT VSPLGGPKGE ISYAREHEAV WFKGKRFTPN LWAGSPGEEQ IKQLSHALDS KGKKAGEEWF TTLKVEAALT
201: RYHEANGKAK ERVLEILRGL AAELQYNINI LVFSSTLLVI AKALFAHASE GRRRRWVFPT LVESHGFEDV KSLNKIHGMK IVGLLPYWLH VAEGVVRNDV
301: DMQSLFLLTG PNGGGKSSLL RSICAAALLG ICGLMVPAES AHIPYFDSIM LHMNSYDSPA DKKSSFQVEM SELRSIIGGT TKKSLVLIDE ICRGTETAKG
401: TCIAGSIIET LDRIGCLGIV STHLHGIFTL PLNINNTVHK AMGTTSIDGQ TIPTWKLTDG VCRESLAFET ARREGVPELI IRRAEYIYQS VYAKEKELLS
501: AEKSSNEKKY STYINVSNLN GTHLPSKRFL SGANQTEVLR EEVESAVTVI CQDHIMEQKS KNIALELTGI KCLQIRTREQ PPPSVVGSSS VYVMFRPDKK
601: LYVGETDDLE GRVRAHRLKE GMHDASFLYF LVPGKSLACQ LESLLINQLS SRGFQLTNTA DGKHRNFGTS NLYA
101: VFTAVEKAAE ALHIAVTEDF VPILSRIKAT VSPLGGPKGE ISYAREHEAV WFKGKRFTPN LWAGSPGEEQ IKQLSHALDS KGKKAGEEWF TTLKVEAALT
201: RYHEANGKAK ERVLEILRGL AAELQYNINI LVFSSTLLVI AKALFAHASE GRRRRWVFPT LVESHGFEDV KSLNKIHGMK IVGLLPYWLH VAEGVVRNDV
301: DMQSLFLLTG PNGGGKSSLL RSICAAALLG ICGLMVPAES AHIPYFDSIM LHMNSYDSPA DKKSSFQVEM SELRSIIGGT TKKSLVLIDE ICRGTETAKG
401: TCIAGSIIET LDRIGCLGIV STHLHGIFTL PLNINNTVHK AMGTTSIDGQ TIPTWKLTDG VCRESLAFET ARREGVPELI IRRAEYIYQS VYAKEKELLS
501: AEKSSNEKKY STYINVSNLN GTHLPSKRFL SGANQTEVLR EEVESAVTVI CQDHIMEQKS KNIALELTGI KCLQIRTREQ PPPSVVGSSS VYVMFRPDKK
601: LYVGETDDLE GRVRAHRLKE GMHDASFLYF LVPGKSLACQ LESLLINQLS SRGFQLTNTA DGKHRNFGTS NLYA
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.