Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G000990.1 | Barley | cytosol | 100.0 | 100.0 |
| KRG90177 | Soybean | cytosol | 41.18 | 9.35 |
| HORVU2Hr1G087660.5 | Barley | plastid | 53.59 | 6.99 |
| Solyc09g090870.2.1 | Tomato | mitochondrion | 49.02 | 6.6 |
| AT3G24320.1 | Thale cress | mitochondrion | 45.75 | 6.26 |
| Bra015033.1-P | Field mustard | mitochondrion | 45.75 | 6.24 |
| CDX77432 | Canola | mitochondrion | 45.75 | 6.24 |
| CDY49227 | Canola | mitochondrion | 45.75 | 6.23 |
| KRH33548 | Soybean | nucleus | 45.75 | 6.19 |
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 45.1 | 6.03 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 11.76 | 2.85 |
| HORVU1Hr1G047640.7 | Barley | plastid | 15.69 | 2.75 |
| HORVU5Hr1G061020.11 | Barley | endoplasmic reticulum, golgi, plasma membrane | 18.3 | 2.71 |
| HORVU2Hr1G118740.5 | Barley | plastid | 13.73 | 2.41 |
| HORVU2Hr1G085940.21 | Barley | cytosol | 13.07 | 2.29 |
| HORVU1Hr1G030930.22 | Barley | plastid | 14.38 | 2.21 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 11.76 | 2.18 |
| KRG90178 | Soybean | mitochondrion | 4.58 | 1.56 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G001030.1 | EnsemblPlantsGene:HORVU6Hr1G001030 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 |
| SUPFAM:SSF52540 | UniParc:UPI000B4695AC | UniProt:A0A287T4D6 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:3270406..3270864
Molecular Weight (calculated)
17232.1 Da
IEP (calculated)
8.372
GRAVY (calculated)
0.231
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDYSTKERS SEMDSLRLFT YWLDTNRRNA ILNNVNMRSF FVLSGPNGGG QSSMLCSLCT AALLGTCGLM MPSAVTPHFN SIMPRPVIAE LMGEVRFGCQ
101: FCSFHFFVVK YVSCIPKNTF STLSYNVQIF WIMESSLIKN SSLMLSNLGI EFL
101: FCSFHFFVVK YVSCIPKNTF STLSYNVQIF WIMESSLIKN SSLMLSNLGI EFL
001: MPVVGISRSA RGYCMISIFE TMKAYSLDDG LTEEALVTKL RTRRCHHLFL HASLRHNASG TCRWGEFGEG GLLWGECSSR NFEWFEGDTL SELLSRVKDV
101: YGLDDEVSFR NVNVPSKNRP RPLHLGTATQ IGALPTEGIP CLLKVLLPST CSGLPSLYVR DLLLNPPAYD IALKIQETCK LMSTVTCSIP EFTCVSSAKL
201: VKLLEQREAN YIEFCRIKNV LDDVLHMHRH AELVEILKLL MDPTWVATGL KIDFDTFVNE CHWASDTIGE MISLDENESH QNVSKCDNVP NEFFYDMESS
301: WRGRVKGIHI EEEITQVEKS AEALSLAVAE DFHPIISRIK ATTASLGGPK GEIAYAREHE SVWFKGKRFT PSIWAGTAGE DQIKQLKPAL DSKGKKVGEE
401: WFTTPKVEIA LVRYHEASEN AKARVLELLR ELSVKLQTKI NVLVFASMLL VISKALFSHA CEGRRRKWVF PTLVGFSLDE GAKPLDGASR MKLTGLSPYW
501: FDVSSGTAVH NTVDMQSLFL LTGPNGGGKS SLLRSICAAA LLGISGLMVP AESACIPHFD SIMLHMKSYD SPVDGKSSFQ VEMSEIRSIV SQATSRSLVL
601: IDEICRGTET AKGTCIAGSV VESLDTSGCL GIVSTHLHGI FSLPLTAKNI TYKAMGAENV EGQTKPTWKL TDGVCRESLA FETAKREGVP ESVIQRAEAL
701: YLSVYAKDAS AEVVKPDQII TSSNNDQQIQ KPVSSERSLE KDLAKAIVKI CGKKMIEPEA IECLSIGARE LPPPSTVGSS CVYVMRRPDK RLYIGQTDDL
801: EGRIRAHRAK EGLQGSSFLY LMVQGKSMAC QLETLLINQL HEQGYSLANL ADGKHRNFGT SSSLSTSDVV SIL
101: YGLDDEVSFR NVNVPSKNRP RPLHLGTATQ IGALPTEGIP CLLKVLLPST CSGLPSLYVR DLLLNPPAYD IALKIQETCK LMSTVTCSIP EFTCVSSAKL
201: VKLLEQREAN YIEFCRIKNV LDDVLHMHRH AELVEILKLL MDPTWVATGL KIDFDTFVNE CHWASDTIGE MISLDENESH QNVSKCDNVP NEFFYDMESS
301: WRGRVKGIHI EEEITQVEKS AEALSLAVAE DFHPIISRIK ATTASLGGPK GEIAYAREHE SVWFKGKRFT PSIWAGTAGE DQIKQLKPAL DSKGKKVGEE
401: WFTTPKVEIA LVRYHEASEN AKARVLELLR ELSVKLQTKI NVLVFASMLL VISKALFSHA CEGRRRKWVF PTLVGFSLDE GAKPLDGASR MKLTGLSPYW
501: FDVSSGTAVH NTVDMQSLFL LTGPNGGGKS SLLRSICAAA LLGISGLMVP AESACIPHFD SIMLHMKSYD SPVDGKSSFQ VEMSEIRSIV SQATSRSLVL
601: IDEICRGTET AKGTCIAGSV VESLDTSGCL GIVSTHLHGI FSLPLTAKNI TYKAMGAENV EGQTKPTWKL TDGVCRESLA FETAKREGVP ESVIQRAEAL
701: YLSVYAKDAS AEVVKPDQII TSSNNDQQIQ KPVSSERSLE KDLAKAIVKI CGKKMIEPEA IECLSIGARE LPPPSTVGSS CVYVMRRPDK RLYIGQTDDL
801: EGRIRAHRAK EGLQGSSFLY LMVQGKSMAC QLETLLINQL HEQGYSLANL ADGKHRNFGT SSSLSTSDVV SIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.