Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- cytosol 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g090870.2.1 | Tomato | mitochondrion | 71.59 | 72.03 |
| KRH33548 | Soybean | nucleus | 69.93 | 70.8 |
| KRG90178 | Soybean | mitochondrion | 27.71 | 70.76 |
| CDX77432 | Canola | mitochondrion | 68.62 | 69.96 |
| AT3G24320.1 | Thale cress | mitochondrion | 68.27 | 69.86 |
| Bra015033.1-P | Field mustard | mitochondrion | 68.44 | 69.79 |
| CDY49227 | Canola | mitochondrion | 68.53 | 69.75 |
| KRG90177 | Soybean | cytosol | 40.3 | 68.4 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 63.81 | 64.54 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 62.94 | 63.83 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 62.85 | 63.74 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 62.85 | 63.74 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 63.46 | 63.57 |
| Os04t0507000-01 | Rice | mitochondrion | 62.33 | 62.99 |
| HORVU2Hr1G087660.5 | Barley | plastid | 62.67 | 61.13 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 6.03 | 45.1 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 6.03 | 45.1 |
| VIT_16s0100g01310.t01 | Wine grape | plastid | 14.95 | 15.39 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 10.31 | 14.88 |
| VIT_16s0098g00680.t01 | Wine grape | cytosol, plastid | 10.58 | 14.79 |
| VIT_17s0000g04170.t01 | Wine grape | cytosol | 11.45 | 13.86 |
| VIT_07s0005g01370.t01 | Wine grape | plastid | 15.38 | 13.57 |
| VIT_11s0016g04090.t01 | Wine grape | nucleus | 12.67 | 12.9 |
| VIT_00s0388g00030.t01 | Wine grape | plastid | 4.9 | 11.43 |
| VIT_00s0485g00020.t01 | Wine grape | mitochondrion, plastid | 4.37 | 10.64 |
| VIT_00s0229g00210.t01 | Wine grape | endoplasmic reticulum, golgi | 2.19 | 9.62 |
| VIT_00s0229g00200.t01 | Wine grape | cytosol | 0.87 | 6.94 |
Protein Annotations
| EntrezGene:100266612 | wikigene:100266612 | MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.1440.10 | Gene3D:3.40.50.300 |
| ProteinID:CCB48631 | ProteinID:CCB48631.1 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | UniProt:F6H8T2 |
| EMBL:FN595496 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | GO:GO:0000166 | GO:GO:0000404 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0030983 | GO:GO:0032300 | GO:GO:0043570 | InterPro:IPR000305 | InterPro:IPR016151 |
| InterPro:IPR035901 | EntrezGene:LOC100266612 | wikigene:LOC100266612 | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF01541 |
| PFAM:PF01624 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 | SMART:SM00534 | SUPFAM:SSF52540 |
| SUPFAM:SSF55271 | SUPFAM:SSF82771 | UniParc:UPI000198357B | ArrayExpress:VIT_05s0049g02090 | EnsemblPlantsGene:VIT_05s0049g02090 | EnsemblPlants:VIT_05s0049g02090.t01 |
| RefSeq:XP_002282256 | RefSeq:XP_002282256.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:9637019..9715468
Molecular Weight (calculated)
127557.0 Da
IEP (calculated)
8.031
GRAVY (calculated)
-0.106
Length
1144 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYWLSTKNVV VSFPRFYSLA LLLRSPACKY TSFRSSTLLL QQFEKSRCLN ERRVLKGAGR MTKNVIGLQN ELDEKDLSHI MWWKERMQMC KKPSTVHLVK
0101: RLIYSNLLGV DPNLKNGNLK EGTLNWEMLQ FKSKFPREVL LCRVGDFYEA IGIDACILVE YAGLNPFGGL RSDSIPRAGC PVMNLRQTLD DLTRSGYSVC
0201: IVEEVQGPTQ ARSRKGRFIS GHAHPGSPYV FGLVGVDHDL DFPEPMPVVG ISRSAKGYSI ILVLETMKTF SVEDGLTEEA LVTKLRTCHY HHLLLHTSLR
0301: RNSSGTCRWG EFGEGGLLWG ECSARHFEWF EGDPVSQLLF KVKELYGFDD QVTFRNVTVS SEKRPRSLHL GTATQIGAIP TEGIPCLLKV LLPSNCTGLP
0401: LLYVRDLLLN PPAYEIASII QATCRLMNNV TCSIPEFTCV SPAKLVKLLE LREANHIEFC RIKSVLDEIL QMHRNSDLNK ILKLLMDPTW VATGLKIDFD
0501: TLVNECEWIS ARIGKMIFLD GENDQKISYH PIIPNDFFED MESPWKGRVK RIHVEEAFAE VERAAEALSL AISEDFLPII SRIKATTAPL GGPKGEVVYA
0601: REHEAVWFKG KRFAPVAWAG TPGEEQIKQL RPAIDSKGRK VGLEWFTTVK VEDALTRYHE AGDKAKARVL ELLRGLSAEL QTKINILIFA SMLLVIAKAL
0701: FAHVSEGRRR KWVFPSLVEL HRSKDMEPLD GANWMKITGL SPYWLDVAQG SAVHNTVDMK SLFLLTGPNG GGKSSLLRSI CAAALLGICG FMVPAESALI
0801: PHFDSIMLHM KSYDSPADGK SSFQIEMSEM RSIITGATSR SLVLIDEICR GTETAKGTCI AGSIVETLDK IGCLGIVSTH LHGIFTLGLN TKNAICKAMG
0901: TEYVDGKTKP TWKLIDGICR ESLAFETAQK EGIPETIIRR AEELYLSIHS KDLLSGRNET ELGHFCLDTT VNTSGEVYNQ LSRITGGTIC PKIESTNEME
1001: VLHKKVESAV TIVCQKKLKE LYKQKNTSKL PEINCVAILP GEQPPPSTIG ASSVYVLFST DKKLYVGETD DLEGRVRAHR SKEGMQKASF LYFVVPGKSL
1101: ACQLETLLIN QLPVQGFQLV NRADGKHRNF GTLDHSVEVV TLHQ
0101: RLIYSNLLGV DPNLKNGNLK EGTLNWEMLQ FKSKFPREVL LCRVGDFYEA IGIDACILVE YAGLNPFGGL RSDSIPRAGC PVMNLRQTLD DLTRSGYSVC
0201: IVEEVQGPTQ ARSRKGRFIS GHAHPGSPYV FGLVGVDHDL DFPEPMPVVG ISRSAKGYSI ILVLETMKTF SVEDGLTEEA LVTKLRTCHY HHLLLHTSLR
0301: RNSSGTCRWG EFGEGGLLWG ECSARHFEWF EGDPVSQLLF KVKELYGFDD QVTFRNVTVS SEKRPRSLHL GTATQIGAIP TEGIPCLLKV LLPSNCTGLP
0401: LLYVRDLLLN PPAYEIASII QATCRLMNNV TCSIPEFTCV SPAKLVKLLE LREANHIEFC RIKSVLDEIL QMHRNSDLNK ILKLLMDPTW VATGLKIDFD
0501: TLVNECEWIS ARIGKMIFLD GENDQKISYH PIIPNDFFED MESPWKGRVK RIHVEEAFAE VERAAEALSL AISEDFLPII SRIKATTAPL GGPKGEVVYA
0601: REHEAVWFKG KRFAPVAWAG TPGEEQIKQL RPAIDSKGRK VGLEWFTTVK VEDALTRYHE AGDKAKARVL ELLRGLSAEL QTKINILIFA SMLLVIAKAL
0701: FAHVSEGRRR KWVFPSLVEL HRSKDMEPLD GANWMKITGL SPYWLDVAQG SAVHNTVDMK SLFLLTGPNG GGKSSLLRSI CAAALLGICG FMVPAESALI
0801: PHFDSIMLHM KSYDSPADGK SSFQIEMSEM RSIITGATSR SLVLIDEICR GTETAKGTCI AGSIVETLDK IGCLGIVSTH LHGIFTLGLN TKNAICKAMG
0901: TEYVDGKTKP TWKLIDGICR ESLAFETAQK EGIPETIIRR AEELYLSIHS KDLLSGRNET ELGHFCLDTT VNTSGEVYNQ LSRITGGTIC PKIESTNEME
1001: VLHKKVESAV TIVCQKKLKE LYKQKNTSKL PEINCVAILP GEQPPPSTIG ASSVYVLFST DKKLYVGETD DLEGRVRAHR SKEGMQKASF LYFVVPGKSL
1101: ACQLETLLIN QLPVQGFQLV NRADGKHRNF GTLDHSVEVV TLHQ
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.