CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025816_P002	Maize	mitochondrion, nucleus	94.61	93.7
Os04t0507000-01	Rice	mitochondrion	86.12	86.04
TraesCS2D01G359500.1	Wheat	mitochondrion	84.88	85.11
TraesCS2B01G379900.1	Wheat	mitochondrion	84.7	84.93
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	84.17	84.4
HORVU2Hr1G087660.5	Barley	plastid	84.26	81.24
VIT_05s0049g02090.t01	Wine grape	mitochondrion	64.54	63.81
KRG90178	Soybean	mitochondrion	25.2	63.62
Solyc09g090870.2.1	Tomato	mitochondrion	63.04	62.71
Bra015033.1-P	Field mustard	mitochondrion	61.98	62.48
CDX77432	Canola	mitochondrion	61.89	62.39
CDY49227	Canola	mitochondrion	61.63	62.01
AT3G24320.1	Thale cress	mitochondrion	60.57	61.27
KRH33548	Soybean	nucleus	61.18	61.24
KRG90177	Soybean	cytosol	35.99	60.39
EER99382	Sorghum	cytosol	10.17	14.32
EER99643	Sorghum	nucleus	11.67	14.01
EES11671	Sorghum	plastid	13.26	13.64
OQU91528	Sorghum	plastid	9.9	13.48
OQU78247	Sorghum	cytosol	9.28	13.38
KXG35601	Sorghum	mitochondrion, nucleus, plastid	15.38	13.34
EES11666	Sorghum	plastid	10.52	13.05
KXG31683	Sorghum	mitochondrion, nucleus	13.62	12.51
EES13125	Sorghum	cytosol	0.09	0.5

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	UniProt:A0A1B6PM01	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:GIY-YIG_endonuc	InterPro:GIY-YIG_endonuc_sf	GO:GO:0000002	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030983
GO:GO:0032042	GO:GO:0042651	InterPro:IPR000305	InterPro:IPR016151	InterPro:IPR035901	EnsemblPlants:KXG26672
ProteinID:KXG26672	ProteinID:KXG26672.1	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01541	PFAM:PF01624
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SMART:SM00534	EnsemblPlantsGene:SORBI_3006G140400	SUPFAM:SSF52540
SUPFAM:SSF55271	SUPFAM:SSF82771	UniParc:UPI0003C6A329	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:50267254..50283204

Molecular Weight (calculated)

125265.0 Da

IEP (calculated)

7.695

GRAVY (calculated)

-0.078

Length

1131 amino acids

Sequence
(BLAST)

0001: MHRVLVSSLV AATPRWLPLA DSILRRRRPR CSPLPMLLFD RRAWSKPRKV SRGISVASRK ANKQGEYCDE SMLSHIMWWK EKMEKCRKPS SVQLTQRLVY
0101: SNILGLDPNL RNGSLKDGTL NMEILLFKSK FPREVLLCRV GDFYEAIGFD ACILVEHAGL NPFGGLRSDS IPKAGCPVVN LRQTLDDLTR CGYSVCIVEE
0201: IQGPTQARSR KSRFISGHAH PGSPYVFGLA EVDHDVEFPD PMPVVGISHS AKGYCLISVL ETMKTYSAEE GLTEEAIVTK LRICRYHHLY LHNSLKNNSS
0301: GTSRWGEFGE GGLLWGECSG KSFEWFDGLP IEELLCKVRE IYGLDEKTVF RNVTVSLEGR PQPLYLGTAT QIGVIPTEGI PSLLKMALPS SCGGLPSMYI
0401: RDLLLNPPSF DVAAAVQEAC RLMGSITCSV PEFTCISAAK LVKLLESKEV NHIEFCRIKN VLDEIMLMNR NAELSAILNK LLVPGSVATG LKVEADMLMN
0501: ECSIISQRIG EVISLGVESD QAITSLEYIP KEFFNDMESS WKGRVKRIHA EEEFANVDRA AEALSIAVIE DFMPIISRVK SVVSSNGGSK GEICYAKEHE
0601: AVWFKGKRFT PTVWANTPGE QQIKQLKPAI DSKGRKVGEE WFTTSKVENA LARYHEACDN ARNKVVELLR GLSSELQDKI NILVFCSTLL IIAKALFGHV
0701: SEARRRGWML PTIFPLSKDC VAEESSNAMD LVGLFPYWLD VNQGNAILND VHMHSLFVLT GPNGGGKSSM LRSVCAAALL GICGLMVPST SAVIPHFDSI
0801: MLHMKAYDSP ADGKSSFQIE MSEIRALVSR ATARSLVLID EICRGTETAK GTCIAGSIIE RLDNVGCLGI ISTHLHGIFD LPLSLSTTDF KAMGTEVVDG
0901: CIHPTWKLMD GICRESLAFQ TARREGMPEF IIRRAEELYL TMSTNNKQTA SMVHNEPRND SPSVNGLVEK PEYLKYRLEI LPGTFEPLRR EVESAVTMIC
1001: KKKLLDLYNK SSIPELVEVV CVAVGAREQP PPSTVGRSSI YVIIRSDNKL YVGQTDDLLG RLHAHRSKEG MQDATILYIL VPGKSVACQL ETLLINQLPS
1101: RGFKLINKAD GKHRNFGISR ISGEAIATQL N

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.