Factsheet for AT3G24320.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77432	Canola	mitochondrion	91.5	91.18
Bra015033.1-P	Field mustard	mitochondrion	91.32	91.0
CDY49227	Canola	mitochondrion	91.23	90.75
VIT_05s0049g02090.t01	Wine grape	mitochondrion	69.86	68.27
KRG90178	Soybean	mitochondrion	27.01	67.41
Solyc09g090870.2.1	Tomato	mitochondrion	66.64	65.52
KRH33548	Soybean	nucleus	65.74	65.04
KRG90177	Soybean	cytosol	37.75	62.61
TraesCS2D01G359500.1	Wheat	mitochondrion	61.27	60.73
KXG26672	Sorghum	mitochondrion, nucleus	61.27	60.57
TraesCS2B01G379900.1	Wheat	mitochondrion	61.0	60.46
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	60.82	60.28
Os04t0507000-01	Rice	mitochondrion	61.0	60.25
Zm00001d025816_P002	Maize	mitochondrion, nucleus	60.91	59.63
HORVU2Hr1G087660.5	Barley	plastid	61.09	58.23
HORVU6Hr1G000990.1	Barley	cytosol	6.26	45.75
HORVU6Hr1G001030.1	Barley	cytosol	6.26	45.75
AT5G54090.1	Thale cress	plastid	11.09	15.58
AT4G02070.1	Thale cress	plastid	16.99	14.35
AT3G18524.1	Thale cress	nucleus	11.99	14.3
AT3G20475.1	Thale cress	cytosol	10.29	14.25
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	10.02	14.14
AT4G25540.1	Thale cress	nucleus, plastid	13.6	14.06
AT3G24495.1	Thale cress	mitochondrion	13.86	13.98
AT1G65070.2	Thale cress	plastid	10.38	13.24

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.1440.10	Gene3D:3.40.50.300	EntrezGene:822021	ProteinID:AEE76889.1
ArrayExpress:AT3G24320	EnsemblPlantsGene:AT3G24320	RefSeq:AT3G24320	TAIR:AT3G24320	RefSeq:AT3G24320-TAIR-G	EnsemblPlants:AT3G24320.1
TAIR:AT3G24320.1	EMBL:AY191303	Unigene:At.43463	ProteinID:BAB02932.1	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:GIY-YIG_endonuc	InterPro:GIY-YIG_endonuc_sf	GO:GO:0000002	GO:GO:0000166	GO:GO:0000404
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787
GO:GO:0030983	GO:GO:0032042	GO:GO:0032300	GO:GO:0042651	GO:GO:0043570	InterPro:IPR000305
InterPro:IPR016151	InterPro:IPR035901	Symbol:MSH1	RefSeq:NP_189075.2	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01541	PFAM:PF01624	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	UniProt:Q84LK0	SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF55271
SUPFAM:SSF82771	UniParc:UPI0000191FC2	SEG:seg	:	:	:

Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]

Coordinates

chr3:-:8822924..8829728

Molecular Weight (calculated)

123927.0 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.167

Length

1118 amino acids

Sequence
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.