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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91808 Canola mitochondrion, nucleus, plastid 86.78 86.98
Bra000896.1-P Field mustard plastid 86.86 86.01
CDX90956 Canola plastid 86.78 85.94
VIT_07s0005g01370.t01 Wine grape plastid 64.5 65.84
KRG96523 Soybean plastid 61.48 63.94
Solyc01g079520.2.1 Tomato plastid 61.1 61.66
GSMUA_Achr5P24510_001 Banana nucleus, plastid 55.29 57.41
HORVU5Hr1G061020.11 Barley endoplasmic reticulum, golgi, plasma membrane 44.64 57.16
Zm00001d020424_P002 Maize nucleus, plastid 53.4 54.55
TraesCS5D01G212500.1 Wheat nucleus 46.75 54.39
KXG35601 Sorghum mitochondrion, nucleus, plastid 52.95 53.76
TraesCS5A01G206300.1 Wheat mitochondrion 52.49 52.69
Os09t0407600-01 Rice mitochondrion, nucleus, plastid 26.59 49.51
AT3G24495.1 Thale cress mitochondrion 24.32 29.04
AT4G25540.1 Thale cress nucleus, plastid 20.39 24.98
AT4G17380.1 Thale cress cytosol, nucleus, plasma membrane 13.22 22.1
AT3G18524.1 Thale cress nucleus 15.63 22.09
AT3G20475.1 Thale cress cytosol 12.84 21.07
AT3G24320.1 Thale cress mitochondrion 14.35 16.99
AT5G54090.1 Thale cress plastid 8.76 14.57
AT1G65070.2 Thale cress plastid 9.14 13.81
Protein Annotations
Gene3D:1.10.1420.10MapMan:14.7.1.3Gene3D:2.30.30.140Gene3D:3.30.420.110Gene3D:3.40.1170.10Gene3D:3.40.50.300
EntrezGene:828147ProteinID:AAB57798.1ProteinID:AAC78699.1ProteinID:AEE82119.1ArrayExpress:AT4G02070EnsemblPlantsGene:AT4G02070
RefSeq:AT4G02070TAIR:AT4G02070RefSeq:AT4G02070-TAIR-GEnsemblPlants:AT4G02070.1TAIR:AT4G02070.1Unigene:At.34340
ProteinID:CAB53337.1ProteinID:CAB80700.1ncoils:CoilInterPro:DNA_mismatch_repair_MSH6_CInterPro:DNA_mismatch_repair_MutS-lik_NInterPro:DNA_mismatch_repair_MutS/MSH
InterPro:DNA_mismatch_repair_MutS_CInterPro:DNA_mismatch_repair_MutS_NInterPro:DNA_mismatch_repair_MutS_clampInterPro:DNA_mismatch_repair_MutS_coreInterPro:DNA_mismatch_repair_MutS_sfInterPro:DNA_mmatch_repair_MutS_con_dom
GO:GO:0000166GO:GO:0000404GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006290
GO:GO:0006298GO:GO:0006950GO:GO:0006974GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0030983GO:GO:0032300GO:GO:0043570
InterPro:IPR002999InterPro:IPR016151InterPro:IPR036678Symbol:MSH6InterPro:MutS_con_dom_sfRefSeq:NP_192116.1
UniProt:O04716InterPro:P-loop_NTPasePFAM:PF00488PFAM:PF01624PFAM:PF05188PFAM:PF05190
PFAM:PF05192PIRSF:PIRSF037677PO:PO:0000037PO:PO:0000084PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007115PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009052
PO:PO:0020038PO:PO:0020100PO:PO:0025022ScanProsite:PS00486PANTHER:PTHR11361PANTHER:PTHR11361:SF31
SMART:SM00333SMART:SM00533SMART:SM00534SUPFAM:SSF48334SUPFAM:SSF52540SUPFAM:SSF53150
SUPFAM:SSF55271SUPFAM:SSF63748InterPro:TudorUniParc:UPI000012F5F9SEG:seg:
Description
MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
Coordinates
chr4:+:905865..913290
Molecular Weight (calculated)
146805.0 Da
IEP (calculated)
6.625
GRAVY (calculated)
-0.499
Length
1324 amino acids
Sequence
(BLAST)
0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.