Factsheet for TraesCS5A01G206300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G212500.1	Wheat	nucleus	83.02	96.22
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	73.69	94.0
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	41.85	77.64
KXG35601	Sorghum	mitochondrion, nucleus, plastid	74.3	75.15
Zm00001d020424_P002	Maize	nucleus, plastid	72.56	73.84
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	58.07	60.08
VIT_07s0005g01370.t01	Wine grape	plastid	54.28	55.2
KRG96523	Soybean	plastid	53.22	55.15
Solyc01g079520.2.1	Tomato	plastid	53.68	53.96
AT4G02070.1	Thale cress	plastid	52.69	52.49
CDX91808	Canola	mitochondrion, nucleus, plastid	52.39	52.31
CDX90956	Canola	plastid	52.54	51.83
Bra000896.1-P	Field mustard	plastid	52.46	51.76
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	23.5	25.37
TraesCS1A01G135100.1	Wheat	nucleus	15.24	20.96
TraesCS1A01G315900.1	Wheat	cytosol	12.81	20.66
TraesCS2A01G171900.1	Wheat	cytosol	12.59	20.49
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	12.51	14.63
TraesCS2A01G588000.2	Wheat	plastid	8.95	12.88
TraesCS1A01G179700.1	Wheat	plastid	7.66	12.14

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983
InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	PANTHER:PTHR11361
PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	EnsemblPlantsGene:TraesCS5A01G206300	EnsemblPlants:TraesCS5A01G206300.1	InterPro:Tudor
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:416213942..416225571

Molecular Weight (calculated)

145560.0 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.416

Length

1319 amino acids

Sequence
(BLAST)

0001: MASRRLSNGR SPLVRKQSQL TAFFASTPKP AAEPSPSSLN PKARKPPLVV PSPSPSPAAS IPKPAAEPSP SPLNPKARKP PLAVPSPPPP KPSPPPQPQQ
0101: EKKHDAAAAP AGEAVGRRLR VYWPLDDAWY EGTVDAYDGG SRRHRVKYDD GEEEEVDLVK EKFEWAAEEA TPPPARKLRR LRRMSDTAKA KSPSAQEHEE
0201: TGDSTEDEDW KKDAAPEDDS DGEEVELDDE EEEVVAVSSR KGKSRNSLST SASVSTVRST SGLGSASSGS TLSKKRKQVD VGALDCAKKF SFQLANTPEK
0301: AEMKVPPSCD TRERILENAH LALTGDLSER FGSRQMEKFT FLGQGRKDAK GRRPADPAYD PRTLFLPPQF LKNLTGGQRQ WWEFKSQHMD KVLFFKMGKF
0401: YELYEMDAHV GAKELDLQYM KGDQPHCGFP EKNLAVNLEK LAQKGYRVLV VEQTETPDQL ELRRRETGTK DKVVRREICA MVTKGTLTEG ESLLANPDTS
0501: YILSVAESYP CNSTKSQDGH TIGVCIIDVS TSKFIIGQFQ DDPERHVLCS ILSEIRPVEI IKPAKMLSAE TERALKNNTR DPLINALLPS TEFWDAEKTI
0601: QVIEQYYSSS DNLTASRNTV GVQNNVGCLP DLLSELIEAG DRAYALSALG GSLFYLKQVL LDDKLLPCAE FEPLTCSGLI NNMRKHMILD AAALENLEIL
0701: ENATGGLSGT LYEQLNHCVT RFGKRLLKRW IVRPLYDCKA ILQRQGAIAI FKGIGHECAM QFRKDLCRLP DMERLLAHLF SRCGENGRSK SVVLYEDTAK
0801: RLLQQFTAAL RGCQQMFQAC SSIRALTGTE GSSLLNDLLS PGKGLPDVSS VLDYFRDAFD WSEADHNGRI IPLEGCDPEY DATSCAIEEI ESSLQEYLKE
0901: QRKLLRDSSV KYVNVGKDTY LIEVSESLRG SVPSDYELQS TKKGVCRYWT PEVKQLISEL SKVATDKESI LKGILQKLIQ RFIEHHSKWR QLVSVSAEID
1001: VLVSLSIAGD YFEGPTCCPT IRELCGPDDT PTFHARNLGH PIIRSDSLSM GSFVPNNINM GGPGNASFIV LTGPNMGGKS TLLRQVCLTI ILAQIGANVP
1101: AENLELSLVD RIFVRMGARD HIMAGKSTFL VELMETASVL SSATKNSLVA LDELGRGTST SDGQAIAASV LDYLVHRVQC LGLFSTHYHK LAVEHEDGKV
1201: SLCHMACQVG TGEGGLEEVT FLYRLTAGSC PKSYGVNVAR LAGIPASVLQ RANEKSIDFE ANYGKRRCAT KDKAICTQED NFATIKDLFC VVKAGNHQED
1301: QATSLSRIRE VQMRAREIA

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.