Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G316200.1 | Wheat | cytosol | 98.29 | 98.41 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 63.45 | 97.92 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 75.18 | 97.31 |
| OQU78247 | Sorghum | cytosol | 85.45 | 89.04 |
| Os05t0498300-01 | Rice | cytosol | 86.8 | 87.76 |
| Zm00001d000329_P002 | Maize | cytosol | 45.72 | 81.84 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 35.33 | 77.9 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 67.85 | 69.99 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 41.56 | 66.54 |
| AT3G20475.1 | Thale cress | cytosol | 65.28 | 66.17 |
| KRH73763 | Soybean | cytosol | 65.16 | 65.8 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 35.82 | 65.4 |
| KRH14375 | Soybean | cytosol | 64.91 | 65.39 |
| CDY65220 | Canola | cytosol | 63.45 | 64.71 |
| Solyc10g018540.1.1 | Tomato | cytosol | 25.79 | 61.52 |
| CDY19637 | Canola | cytosol | 62.96 | 60.52 |
| Bra035777.1-P | Field mustard | cytosol | 62.47 | 60.47 |
| TraesCS2A01G171900.1 | Wheat | cytosol | 17.6 | 17.78 |
| TraesCS1A01G135100.1 | Wheat | nucleus | 19.32 | 16.48 |
| TraesCS5A01G206300.1 | Wheat | mitochondrion | 20.66 | 12.81 |
| TraesCS3A01G117500.1 | Wheat | mitochondrion, nucleus | 17.73 | 11.87 |
| TraesCS1A01G179700.1 | Wheat | plastid | 10.76 | 10.58 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 13.69 | 9.93 |
| TraesCS2A01G588000.2 | Wheat | plastid | 10.15 | 9.06 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000712 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030983 | GO:GO:0045143 | GO:GO:0051026 | InterPro:P-loop_NTPase |
| PFAM:PF00488 | PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF20 |
| SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1A01G315900 | EnsemblPlants:TraesCS1A01G315900.1 |
| TIGR:cd03281 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:508133863..508153676
Molecular Weight (calculated)
92064.8 Da
IEP (calculated)
4.801
GRAVY (calculated)
-0.058
Length
818 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEEEEQLE EEEEEVAETG IDSQVHMACV MQGRRVGVSY YDSNTRQLFV LEIWEDSAGG FPLIDLVKCQ AKPSTIYAST KTEEELLSAL QRNDSNVDPP
101: VVKLMKSSTF TYEQAWHRLI YLKVAAMDDG LSVKERICFL NSMMDLGSDV QVRAAGGLLA ILDSERLLDT LEQMEGGASI AIDSVTQISL DRLLKLDAAA
201: HEALQIFQVD KHPSYMGIGR AKEGFSVFGI LNKCVTPMGR RLLRAWFLRP IIDIDVINNR LNTISFFLCC EEVMSALRQT LKSVRDVPHM LKKFNSPSSS
301: CTSSDWHTFL KCICSLLHIN KIFEVGISEH LANKLQHMSI DLVEKANSSI TAELDYVSNL VIGVIDVQRS KEKGYETLVK ENLCDELDEL RMVYEGLPDF
401: LEQVSANENA SFPFSLECRK APLIVYVHQI GYLMCFFDEK ISEALLIELQ DFEFAFSEDG EERRFYYHTQ KTRELDNLLG DIYHKILDME RAIIRDLVCR
501: VLQFLPQLTK AVNFAAELDC ILSLAIVARQ NNYVRPILTE DSILEIQNGR HALQEMTVDT FVPNDTKIRS AGRINIITGP NYSGKSIYIK QVALVVFLAH
601: IGSFVPADSA VVGLTDRIFC AMGSKSMTTE QSTFMIDLHQ VGTMLRHATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA NYDYPPKVLL STHLTEIFAE
701: NYFPQSEHIK CCTMSVLNPD GQTSNEDIIF LYRLVPGQAL LSFGLHCAQL AGVPSEVIQR SASVLEDIHS KRPVRRMICD NLAAKDKQYQ DAMAKLLAFD
801: PRKGDLNHFF EDVFPPEA
101: VVKLMKSSTF TYEQAWHRLI YLKVAAMDDG LSVKERICFL NSMMDLGSDV QVRAAGGLLA ILDSERLLDT LEQMEGGASI AIDSVTQISL DRLLKLDAAA
201: HEALQIFQVD KHPSYMGIGR AKEGFSVFGI LNKCVTPMGR RLLRAWFLRP IIDIDVINNR LNTISFFLCC EEVMSALRQT LKSVRDVPHM LKKFNSPSSS
301: CTSSDWHTFL KCICSLLHIN KIFEVGISEH LANKLQHMSI DLVEKANSSI TAELDYVSNL VIGVIDVQRS KEKGYETLVK ENLCDELDEL RMVYEGLPDF
401: LEQVSANENA SFPFSLECRK APLIVYVHQI GYLMCFFDEK ISEALLIELQ DFEFAFSEDG EERRFYYHTQ KTRELDNLLG DIYHKILDME RAIIRDLVCR
501: VLQFLPQLTK AVNFAAELDC ILSLAIVARQ NNYVRPILTE DSILEIQNGR HALQEMTVDT FVPNDTKIRS AGRINIITGP NYSGKSIYIK QVALVVFLAH
601: IGSFVPADSA VVGLTDRIFC AMGSKSMTTE QSTFMIDLHQ VGTMLRHATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA NYDYPPKVLL STHLTEIFAE
701: NYFPQSEHIK CCTMSVLNPD GQTSNEDIIF LYRLVPGQAL LSFGLHCAQL AGVPSEVIQR SASVLEDIHS KRPVRRMICD NLAAKDKQYQ DAMAKLLAFD
801: PRKGDLNHFF EDVFPPEA
001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
Arabidopsis Description
MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.