Factsheet for Bra035777.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19637	Canola	cytosol	99.64	98.94
AT3G20475.1	Thale cress	cytosol	86.15	90.21
VIT_19s0090g00670.t01	Wine grape	cytosol	69.47	74.02
KRH14375	Soybean	cytosol	66.04	68.72
KRH73763	Soybean	cytosol	65.33	68.15
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	41.07	67.91
GSMUA_Achr6P29480_001	Banana	cytosol	29.7	67.66
HORVU1Hr1G066830.9	Barley	cytosol	48.05	64.24
OQU78247	Sorghum	cytosol	58.93	63.44
TraesCS1D01G316200.1	Wheat	cytosol	60.83	62.91
Os05t0498300-01	Rice	cytosol	60.12	62.79
TraesCS1A01G315900.1	Wheat	cytosol	60.47	62.47
TraesCS1B01G328200.1	Wheat	cytosol	39.17	62.45
Zm00001d000329_P002	Maize	cytosol	33.61	62.14
Solyc10g018540.1.1	Tomato	cytosol	24.85	61.22
GSMUA_Achr6P29470_001	Banana	mitochondrion	29.23	55.13
Bra028327.1-P	Field mustard	extracellular, vacuole	4.26	21.82
Bra021052.1-P	Field mustard	cytosol	16.33	17.42
Bra001709.1-P	Field mustard	nucleus	19.05	17.18
Bra019156.1-P	Field mustard	plastid	20.0	15.59
Bra035921.1-P	Field mustard	cytosol	5.44	12.3
Bra000896.1-P	Field mustard	plastid	19.41	12.27
Bra028373.1-P	Field mustard	mitochondrion, plastid	14.79	11.27
Bra035922.1-P	Field mustard	cytosol	2.25	11.24
Bra022693.1-P	Field mustard	plastid	9.7	10.22
Bra015033.1-P	Field mustard	mitochondrion	13.25	9.98
Bra022497.1-P	Field mustard	plastid	9.7	9.26
Bra035923.1-P	Field mustard	cytosol	1.66	9.15

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra035777	EnsemblPlants:Bra035777.1	EnsemblPlants:Bra035777.1-P
InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000003	GO:GO:0000166
GO:GO:0000712	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010777	GO:GO:0016043	GO:GO:0030983	GO:GO:0043073
GO:GO:0045143	GO:GO:0051026	UniProt:M4F3X7	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF20	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0002547AFA	:	:	:

Description

AT3G20475 (E=2e-284) ATMSH5, MSH5 | MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding

Coordinates

chrA05:-:17123140..17130225

Molecular Weight (calculated)

95751.4 Da

IEP (calculated)

4.793

GRAVY (calculated)

-0.010

Length

845 amino acids

Sequence
(BLAST)

001: MEETDETETE SQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PLVIYTSTKS EDSFVSALQK SDGTEEDTMV KQVKSSTFSY
101: EQAWHRLVYL RVTGMDEGLN IKERVCYLSS MMDVGSEVQV RVSGGLLAIL ESERIVDTLE QNESGTASIA IDSVMEVPLN KFLKLDAAAH EALQIFQIDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAVSFFLRLM PSRIGVGNQA DDIFAGYTEI CEGHIPFAQE SVFSLHAMCE
301: LVCRSCRFFI SCTHLVLLNI SFLCENKKFN SPTSLCTSND WTAFMKSIGA LLHVNKIFEV GVSESLREHM RRFNLDIIEK AGLCISTELD YVYELVLGVI
401: DVTRSKEKGY QTLVKDGFCA ELDELRQIYE GLPEFLQEVS SMEFEHLPHL HKENLPPCIV YIQQIGYLMC IFGEKLDETA LDRINEFEFA FSDLDGETQR
501: FFYHTPKTRE LDNVLGDIYH KILDMERAII RDLLSHTLLF SAHLLKAVNF VAELDCILSL ACVAHQNKYV RPVLTMESLL DIRNGRHVLQ EMAVDTFIPN
601: DTEINDNGRI HIITGPNYSG KSIYVKQVAL IVFLSHIGSF VPADAATVGL TDRIFCAMGS KFMTAEQSTF MIDLHQVGMM LRQATSRSLC LLDEFGKGTL
701: TEDGIGLLGG TISHFASCNE PPRVLVCTHL TELLNESCLP VSEKIRFYTM SVLRPDTESA NMEEIVFLYR LIPGQTLLSY GVPEEVVKRA AIVLDVFESN
801: NNVDKLNLDN ISSQDQVFKD AVDKFMEFDI SKGDIRAFFE DMFTS

Best Arabidopsis Sequence Match ( AT3G20475.1 )
(BLAST)

001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS

Arabidopsis Description

MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.