Factsheet for Bra021052.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76574	Canola	cytosol, peroxisome, plasma membrane	98.61	98.61
Bra035923.1-P	Field mustard	cytosol	18.81	97.39
Bra035922.1-P	Field mustard	cytosol	20.33	95.27
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	94.44	95.17
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	93.43	93.43
Bra035921.1-P	Field mustard	cytosol	43.18	91.44
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	78.66	78.66
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	41.41	77.54
Os07t0486000-02	Rice	cytosol	74.12	73.56
TraesCS2B01G198300.1	Wheat	cytosol	73.99	72.61
TraesCS2A01G171900.1	Wheat	cytosol	73.61	71.98
EER99382	Sorghum	cytosol	72.6	71.61
HORVU2Hr1G031870.17	Barley	cytosol	73.74	70.87
Zm00001d006382_P004	Maize	cytosol	68.31	64.02
Bra028327.1-P	Field mustard	extracellular, vacuole	6.94	33.33
Bra001709.1-P	Field mustard	nucleus	22.22	18.78
Bra035777.1-P	Field mustard	cytosol	17.42	16.33
Bra019156.1-P	Field mustard	plastid	21.46	15.68
Bra028373.1-P	Field mustard	mitochondrion, plastid	20.71	14.79
Bra000896.1-P	Field mustard	plastid	21.34	12.64
Bra022693.1-P	Field mustard	plastid	11.62	11.47
Bra022497.1-P	Field mustard	plastid	11.24	10.05
Bra015033.1-P	Field mustard	mitochondrion	13.89	9.8

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.30.420.110	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra021052	EnsemblPlants:Bra021052.1
EnsemblPlants:Bra021052.1-P	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000003	GO:GO:0000166	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010777	GO:GO:0016043
GO:GO:0030983	GO:GO:0043073	GO:GO:0045143	InterPro:IPR036678	UniProt:M4DX06	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	PANTHER:PTHR11361
PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0002547097
SEG:seg	:	:	:	:	:

Description

AT4G17380 (E=0.0) MSH4, ATMSH4 | MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding

Coordinates

chrA08:+:10202736..10208148

Molecular Weight (calculated)

89131.0 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.090

Length

792 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVVGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT NTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFSHMNIDAT SVENLEIIDP FHNSLLGTSN KKRSLFQMFK
201: TTKTVGGTRL LRANLLQPLK DIKTINTRLN CLDELMSNEE LFYGLSQVLR KFPKETDRVL CHFCYKPKKV TEAVLGFDNT RRSQNMISSI ILLKTALDAL
301: PLLAMALKDA KCFLLANIYK TVCENDRYAS IRKRVGEVID DDVLHARVPF VARSQQCFAL KAGIDGFLDM ARRTFCDTSE AIHNLARKYR EEFNLPNLKL
401: PFNNRQGFFF RISQKEVQGK LPSKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFVRT EICLEALMDA IREDVSALTL LAEVLCLLDM IVNSFAHSIS
501: TKPGYRYSRP ELTDSGPLAI DAGRHPILES IHNDFVPNSI FMSEASNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATMRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVSNRSLIV MDELGRATSS SDGLAMAWSC CEHLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PNTVIETART ITSRITDKEL KRIELNCEKH HEKHRIYRVA QKLICLKYST QNDDSIRQAL QNLKDSFTER RL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.