Factsheet for Os07t0486000-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G198300.1	Wheat	cytosol	90.48	89.47
TraesCS2A01G171900.1	Wheat	cytosol	90.73	89.38
EER99382	Sorghum	cytosol	89.22	88.67
HORVU2Hr1G031870.17	Barley	cytosol	89.72	86.89
Zm00001d006382_P004	Maize	cytosol	83.96	79.29
GSMUA_Achr8P08020_001	Banana	cytosol	48.62	78.54
VIT_00s0229g00200.t01	Wine grape	cytosol	14.16	78.47
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	76.07	76.64
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	40.1	75.65
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	74.31	74.87
Bra035923.1-P	Field mustard	cytosol	14.29	74.51
Bra021052.1-P	Field mustard	cytosol	73.56	74.12
CDX76575	Canola	cytosol	12.91	74.1
CDY59535	Canola	cytosol	12.91	74.1
CDX76574	Canola	cytosol, peroxisome, plasma membrane	73.43	73.99
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	72.18	73.28
KRH28123	Soybean	cytosol	72.68	73.05
Bra035922.1-P	Field mustard	cytosol	15.29	72.19
Bra035921.1-P	Field mustard	cytosol	30.83	65.78
Os05t0274200-01	Rice	cytosol	22.18	18.79
Os05t0498300-01	Rice	cytosol	17.17	16.93
Os01t0180600-01	Rice	mitochondrion, nucleus	20.43	13.32
Os10t0509000-01	Rice	cytosol, nucleus	8.65	12.73
Os04t0682900-01	Rice	plastid	11.4	10.59
Os04t0680700-01	Rice	plastid	6.39	10.26
Os04t0507000-01	Rice	mitochondrion	13.53	9.54
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	5.51	6.19
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.25	1.65
Os04t0683100-01	Rice	cytosol, nucleus	0.0	0.0
Os04t0682800-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:Os07g0486000	EnsemblPlants:Os07t0486000-02
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	PANTHER:PTHR11361
PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI00018F0BE3
SEG:seg	:	:	:	:	:

Description

the rice homolog of MSH4, MutS-homolog 4Similar to MSH4. (Os07t0486000-01);MutS protein, Gamete development in meiosis, Regulation of crossover formation (Os07t0486000-02)

Coordinates

chr7:+:17870561..17880163

Molecular Weight (calculated)

88825.4 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.106

Length

798 amino acids

Sequence
(BLAST)

001: MEGDAAGAGG GDRSSIVIGL IENRAKEVGV AAFDLRSASL HLSQYIETSC SYHNTKTLLH FYDPMVAIVP PNKTAADGMV GVSELVGKHL PTNKKITMAR
101: GCFDDTKGAV MVKNLSARDP SALGLDTYCK QYYLCLAAAS ATIKWIESER GVIITNHSLS VTFNGSFDHM NIDSTSVQTL EIIDPLHTEL WGTSNKKKSL
201: FQMLKTTKTT GGTRLLRANL LQPLKDIQTI NTRLDCLDEL MSNEELFFGL TQGLRKFPKE SDKVLCHFCF KPKKDTDEVL KPANGRKSQG LISDIIVLKT
301: ALDAIPFLSK VLRGAKSFLL RNIYQTICEN PKYASMRKRI GDVIDEDVVH SRAPFVTCTQ QCFAIKAGID GLLDVARRSF CDTSEAIHNL ANKYREDFKL
401: PNLKIPYNNR LGFYFIVPQK DITERLPNKF IQVVRHGKNV HCSSLELASL NARNKSAAAE CFLRTELCLE GLINEIREDI GILTLLAEVL CLLDMLVNSF
501: AFTISTKPVD RYTRPEFTDD GPMAINAGRH PILESLHNDF VPNNLFLSEA SNMVLVMGPN MSGKSTYLQQ ICLIVILAQI GCYVPAQFAS LRVVDRVFTR
601: IGTGDNVENN SSTFMTEMKE TAFIMQNVSS KSLIVVDELG RATSSSDGLA IAWSCCEYLL STKAYTVFAT HMESLSELAT IYPNVKILHF EVDLRNDRLD
701: FKFRLKDGVR KVPHYGLLLA KVAGLPSSVI DTAASITSRI TEQEMVRKDD NCEQYRSLQM AYQVTQRLIC LKQSNQGDDY IREALQNLKD GYAAGRLT

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.