Factsheet for Os01t0180600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G119400.1	Wheat	mitochondrion	77.12	77.25
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	77.04	77.17
TraesCS3B01G136600.1	Wheat	mitochondrion	76.88	77.0
KXG31683	Sorghum	mitochondrion, nucleus	72.79	72.38
Zm00001d039596_P004	Maize	nucleus	71.16	70.3
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	51.31	56.37
Solyc07g018350.2.1	Tomato	nucleus	36.52	55.12
VIT_11s0016g04090.t01	Wine grape	nucleus	48.77	53.11
CDY25338	Canola	plastid	45.91	51.09
KRH39265	Soybean	mitochondrion	45.02	51.07
AT3G24495.1	Thale cress	mitochondrion	46.16	50.95
Bra028373.1-P	Field mustard	mitochondrion, plastid	46.08	50.86
CDY47171	Canola	mitochondrion, nucleus	45.26	50.69
KRH48416	Soybean	cytosol	44.12	47.83
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	12.99	22.36
Os07t0486000-02	Rice	cytosol	13.32	20.43
Os05t0274200-01	Rice	cytosol	15.36	19.96
Os05t0498300-01	Rice	cytosol	12.42	18.79
Os04t0682900-01	Rice	plastid	9.8	13.97
Os10t0509000-01	Rice	cytosol, nucleus	6.05	13.65
Os04t0507000-01	Rice	mitochondrion	12.42	13.43
Os04t0680700-01	Rice	plastid	4.82	11.87
Os04t0683100-01	Rice	cytosol, nucleus	0.08	0.5
Os04t0682800-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EntrezGene:4325353
ProteinID:BAD68036.1	ProteinID:BAD68084.1	ProteinID:BAF04122.1	ProteinID:BAS70724.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166
GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983
GO:GO:0032300	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	EnsemblPlantsGene:Os01g0180600
EnsemblPlants:Os01t0180600-01	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192
PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	UniProt:Q5VR41	SMART:SM00533
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI0000457D40
RefSeq:XP_015622469.1	SEG:seg	:	:	:	:

Description

Similar to MutS homolog 7 (Fragment). (Os01t0180600-01)

Coordinates

chr1:-:4234573..4244531

Molecular Weight (calculated)

135336.0 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.266

Length

1224 amino acids

Sequence
(BLAST)

0001: MQPRRRQQQQ QSILSFLQKK PAAAAGEEGA TPERPPRPPA ASVAGIMERL VRPPRQQQQG RDQDASQARH VEQRALPVKN QTTSNECSSA LFLESCNAGD
0101: NKAAMLIAEE GSNMTPLQEP LKSLWPSKDD FVRASTLSPE LGLYQNLPPH CPKKLPFESS NNNCIGANSS FEEFDVQTPQ DTSKTVFWRS SRGADTPLTE
0201: SDSDQTPLQH PSKFSFVSPN GEYVRGATLF ALDSNYTPRR ESSEKLSSGP SDLPYIKATK LFTEFDSNGT PSQNHLKKLS SVPKNDKRIG AGAELFSEFD
0301: PSPLKPETPV MRAVIPRLKR VQEDQRVTTN DSCSPFWGPN KKVKPAQCSP VENKVHDEMA ESARSKFEWL NPSNIRDANR RRLADPLYDK TTLFIPPDAL
0401: RKMSTSQKQY WNIKCKYMDV VLFFKVGKFY ELYEVDAEIG QKELDWKMTI SGVGKCRQVG ISESGIDVAV EKLLARGYKV GRIEQMESAD QAKSRGSNSV
0501: ILRKLVHVST PSTVGDSNIG ADAVHLLSLK EITLASNGSR VYGFAFLDYA ALKIWVGSVH DDDTFAALGA LLVQVSPKEI IYETSGLSKE THRLIKKYAS
0601: AGSVKMQLTP LYGLYFSDVS EIQTLIDSRG YFKASTSSWL SALNSSVNKD AVICALGGLV SHLTRLMLED ALKNGEVLAY HVYRTCLRMD GQTLVNLEIF
0701: SNNFDGGSSG TLYKHLNHCI TPCGKRLLRR WICHPLKDID AINERLDIVE GFIQNCGLGS VTLEHLRKVP DLERLLGRVK STVGLSSAVL LPFVGEKILK
0801: RRIKTFGMLV KGLRVGIDLL DILQRQDHGI SALSKAVDIP TLSSLGELIH HFEEAIDDDF PRYQDHSVKD DDANTLAMLV DLLVGKASEW SLVINALSTI
0901: DVLRSFAAMA LSSFGTTCRP NILLKGKAPV LQMKGLWHPY AFAESVNGLV PNDLSLGQNL SGQNRFALLL TGPNMGGKST IMRATCLAIV LAQLGCYVPC
1001: QSCELTLADA IFTRIGAMDR IMSGESTFLV ECTETASILE NATEDSLVLL DELGRGTSTF DGYAIAYAVF RHLVEAVRCR LLFATHYHPL TKEFASHPHV
1101: TLQHMACMLK PRNGGDGGEK ELTFLYRLTS GACPESYGLQ VATMAGLPRS IVERASAAGE MMRSKIAGNF RSSEERAEFS TLHEEWVRTI VAIGGVKDAH
1201: LDEDTMDTLF CVFHELKAHF RKRR

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.