Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G119400.1 | Wheat | mitochondrion | 97.22 | 97.22 |
| TraesCS3A01G117500.1 | Wheat | mitochondrion, nucleus | 96.4 | 96.4 |
| Os01t0180600-01 | Rice | mitochondrion, nucleus | 77.0 | 76.88 |
| KXG31683 | Sorghum | mitochondrion, nucleus | 73.08 | 72.54 |
| Zm00001d039596_P004 | Maize | nucleus | 71.19 | 70.22 |
| GSMUA_Achr7P13290_001 | Banana | cytosol, plastid | 52.78 | 57.9 |
| Solyc07g018350.2.1 | Tomato | nucleus | 36.58 | 55.12 |
| VIT_11s0016g04090.t01 | Wine grape | nucleus | 49.35 | 53.65 |
| KRH39265 | Soybean | mitochondrion | 45.58 | 51.62 |
| CDY25338 | Canola | plastid | 46.15 | 51.27 |
| CDY47171 | Canola | mitochondrion, nucleus | 45.58 | 50.96 |
| Bra028373.1-P | Field mustard | mitochondrion, plastid | 46.24 | 50.95 |
| AT3G24495.1 | Thale cress | mitochondrion | 46.24 | 50.95 |
| KRH48416 | Soybean | cytosol | 45.34 | 49.07 |
| TraesCS2B01G198300.1 | Wheat | cytosol | 13.18 | 19.95 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 17.18 | 19.94 |
| TraesCS2B01G372300.1 | Wheat | plastid | 17.51 | 19.38 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 14.81 | 18.78 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 7.53 | 17.36 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 12.93 | 14.01 |
| TraesCS3B01G287700.1 | Wheat | cytosol | 8.92 | 12.33 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 8.27 | 11.0 |
| TraesCS1B01G200700.1 | Wheat | plastid | 7.28 | 10.75 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:14.7.1.4 | Gene3D:3.30.420.110 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_Msh2 |
| InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | InterPro:DNA_mmatch_repair_MutS_con_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR016151 | InterPro:IPR036678 | InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase |
| PFAM:PF00488 | PFAM:PF01624 | PFAM:PF05188 | PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF121 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
| SUPFAM:SSF53150 | SUPFAM:SSF55271 | EnsemblPlantsGene:TraesCS3B01G136600 | EnsemblPlants:TraesCS3B01G136600.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:+:119465025..119474627
Molecular Weight (calculated)
134457.0 Da
IEP (calculated)
7.906
GRAVY (calculated)
-0.268
Length
1222 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQPRRQQQSL LSFLHPRQSP AQEALGAGTP PERPPRPPAA SSVDGIMERL VRPPSQGRNK DAAQIRNAER ALPGKNEDTS NEQPSASFPV RYNGKYSRGT
0101: VLFAEHSTDT TPPQEPLKFS ARSSTDEFVK ASTLFPELGS DQTLLQECPK KLSSECPSNQ YVQANSVFEA FDVQTPSQDP LKRIFSGPFH GADTPLSEYR
0201: SYPIPLQHPS KNLSSGSSSG EYLRAVTPLG LDSNDTPTAK HSKKLFSGSS DHSYIKATNL FPEFDSNGTP LQNHSNKFSV SMNGKHIGAA ATLFPELDSV
0301: LLKPETPVTR AVAPRGKRVQ QDQRMTANNS QSPLWGSNKK VKSAHCSPPG KMVHDEMAES ARSKFEWLNP LNIRDANKRR PDDPLYDKRT LFIPPDALRK
0401: MSTSQKQYWS IKCKYMDVLL FFKVGKFYEL YEVDAEIGQK ELDWKMTISG VGKCRQVGIS ESGIDDAVEK LLARGYKVGR IEQMESAAQA KARGPNSVIE
0501: RKLAHVSTPS TAADSNIGPD AVHLLALKEV TLASNGSRLY GFAFLDYAAL KIWVGSLQDD DSSAALGALL VQVSPREIIY ESSGLSRESR KSMIKYASAG
0601: SVKMQLTPLP GTDFSDASQI QMLAHSKGYF KASTDSWLSA LDYSVNRDAV ICALGGLIGH LTRLMLDDAL KNGEVLPYNV YQTCLRMDGQ TLVNLEIFGN
0701: NFDGGSSGTL YKHLNHCITA SGKRLLRRWI CHPLKDVDAI NRRLDIVEGF IQHCGVGSIT LEHLRKIPDL ERLLGRVRST VGLTSAVLLP FVGEKILKRR
0801: IKTFGMLIKG LRVAIDLLSA LHREDHGIPA LSKSVDIPTL SSLDELVHQF EEDIRIDFEQ YQDHDIKDND ATILANSVEL FVGKATEWSL VINAISTVDV
0901: LRSFAAMALS SFGTMCRPRI LLKDKSPILR MKGLWHPYAF AESGTGLVPN DLSLGQDLLG HNRFALLLTG PNMGGKSTIM RATCLAIVLA QLGCYVPCIS
1001: CELTLADSIF TRLGATDRIM SGESTFLVEC SETASVLQNA TEDSLVLLDE LGRGTSTFDG YAIAYAVFRH LVEQVRCRLL FATHYHPLTK EFASHPHVSL
1101: QHMACMLRPR SVGNGEMELT FLYRLASGAS PESYGLQVAT MAGIPKSIVE KAAVAGEMMK SRIAGSFRSS EGRAEFSTLH EDWLQTILAI GGVKDAHLDE
1201: DTMDTMFCVA QELKSHFRKV GS
0101: VLFAEHSTDT TPPQEPLKFS ARSSTDEFVK ASTLFPELGS DQTLLQECPK KLSSECPSNQ YVQANSVFEA FDVQTPSQDP LKRIFSGPFH GADTPLSEYR
0201: SYPIPLQHPS KNLSSGSSSG EYLRAVTPLG LDSNDTPTAK HSKKLFSGSS DHSYIKATNL FPEFDSNGTP LQNHSNKFSV SMNGKHIGAA ATLFPELDSV
0301: LLKPETPVTR AVAPRGKRVQ QDQRMTANNS QSPLWGSNKK VKSAHCSPPG KMVHDEMAES ARSKFEWLNP LNIRDANKRR PDDPLYDKRT LFIPPDALRK
0401: MSTSQKQYWS IKCKYMDVLL FFKVGKFYEL YEVDAEIGQK ELDWKMTISG VGKCRQVGIS ESGIDDAVEK LLARGYKVGR IEQMESAAQA KARGPNSVIE
0501: RKLAHVSTPS TAADSNIGPD AVHLLALKEV TLASNGSRLY GFAFLDYAAL KIWVGSLQDD DSSAALGALL VQVSPREIIY ESSGLSRESR KSMIKYASAG
0601: SVKMQLTPLP GTDFSDASQI QMLAHSKGYF KASTDSWLSA LDYSVNRDAV ICALGGLIGH LTRLMLDDAL KNGEVLPYNV YQTCLRMDGQ TLVNLEIFGN
0701: NFDGGSSGTL YKHLNHCITA SGKRLLRRWI CHPLKDVDAI NRRLDIVEGF IQHCGVGSIT LEHLRKIPDL ERLLGRVRST VGLTSAVLLP FVGEKILKRR
0801: IKTFGMLIKG LRVAIDLLSA LHREDHGIPA LSKSVDIPTL SSLDELVHQF EEDIRIDFEQ YQDHDIKDND ATILANSVEL FVGKATEWSL VINAISTVDV
0901: LRSFAAMALS SFGTMCRPRI LLKDKSPILR MKGLWHPYAF AESGTGLVPN DLSLGQDLLG HNRFALLLTG PNMGGKSTIM RATCLAIVLA QLGCYVPCIS
1001: CELTLADSIF TRLGATDRIM SGESTFLVEC SETASVLQNA TEDSLVLLDE LGRGTSTFDG YAIAYAVFRH LVEQVRCRLL FATHYHPLTK EFASHPHVSL
1101: QHMACMLRPR SVGNGEMELT FLYRLASGAS PESYGLQVAT MAGIPKSIVE KAAVAGEMMK SRIAGSFRSS EGRAEFSTLH EDWLQTILAI GGVKDAHLDE
1201: DTMDTMFCVA QELKSHFRKV GS
0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK
Arabidopsis Description
MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.