Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G171900.1 | Wheat | cytosol | 99.13 | 98.77 |
| HORVU2Hr1G031870.17 | Barley | cytosol | 97.27 | 95.27 |
| Os07t0486000-02 | Rice | cytosol | 89.47 | 90.48 |
| EER99382 | Sorghum | cytosol | 87.86 | 88.29 |
| VIT_00s0229g00200.t01 | Wine grape | cytosol | 14.37 | 80.56 |
| Zm00001d006382_P004 | Maize | cytosol | 82.53 | 78.82 |
| GSMUA_Achr8P08020_001 | Banana | cytosol | 47.09 | 76.92 |
| Solyc08g007330.2.1 | Tomato | cytosol, peroxisome, plastid | 75.09 | 76.52 |
| Bra035923.1-P | Field mustard | cytosol | 14.37 | 75.82 |
| CDX76575 | Canola | cytosol | 13.01 | 75.54 |
| CDY59535 | Canola | cytosol | 13.01 | 75.54 |
| PGSC0003DMT400032552 | Potato | cytosol, peroxisome, plastid | 39.53 | 75.41 |
| AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 73.36 | 74.75 |
| CDX76574 | Canola | cytosol, peroxisome, plasma membrane | 72.61 | 73.99 |
| Bra021052.1-P | Field mustard | cytosol | 72.61 | 73.99 |
| Bra035922.1-P | Field mustard | cytosol | 15.49 | 73.96 |
| KRH28123 | Soybean | cytosol | 72.61 | 73.8 |
| CDY59530 | Canola | endoplasmic reticulum, nucleus, peroxisome | 71.25 | 73.16 |
| Bra035921.1-P | Field mustard | cytosol | 30.86 | 66.58 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 12.02 | 18.3 |
| TraesCS1B01G149700.3 | Wheat | nucleus | 21.44 | 17.95 |
| TraesCS2B01G372400.1 | Wheat | mitochondrion, plastid | 22.55 | 17.28 |
| TraesCS2B01G372300.1 | Wheat | plastid | 22.55 | 16.49 |
| TraesCS3B01G136600.1 | Wheat | mitochondrion | 19.95 | 13.18 |
| TraesCS3B01G287700.1 | Wheat | cytosol | 12.39 | 11.31 |
| TraesCS1B01G200700.1 | Wheat | plastid | 10.78 | 10.51 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 14.5 | 10.37 |
| TraesCS2B01G595200.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 11.65 | 10.24 |
| KRG88723 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 0.37 | 2.48 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.1 | Gene3D:3.30.420.110 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C |
| InterPro:DNA_mismatch_repair_MutS_clamp | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030983 | InterPro:IPR036678 |
| InterPro:MutS_con_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00488 | PFAM:PF05190 | PFAM:PF05192 | PIRSF:PIRSF005813 |
| PANTHER:PTHR11361 | PANTHER:PTHR11361:SF21 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 |
| EnsemblPlantsGene:TraesCS2B01G198300 | EnsemblPlants:TraesCS2B01G198300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2B:-:175638457..175649555
Molecular Weight (calculated)
89411.1 Da
IEP (calculated)
7.682
GRAVY (calculated)
-0.057
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGAAGGGG GGGGGVAVAG DRSSFVIGLI ENRAKEVGVA AFDLRSASLH LSQYIETSCS YQNTKTLLHF YDPNTVIVPP NKTAADGMVG VSELVDKNYQ
101: ASKKVTMARG CFDDTKGAVM VKNLSARDPS ALGLDTYCKQ YYLCLAAASA TIKWIESEKG VIITNHSLSV TFNGSFDHMN IDSTSVQTLE IIDPLHTELW
201: GTSNKKKSLF QMLKTTKTTG GSRLLRANLL QPLKDIQTIN ARLDCLDELV SNEELFFGLT QGLRKFPKES DKVLCHFCFK PKKVTDEVLK PANGRKSQLL
301: ISDIIVLKTA LDAIPFLSKV LKGANSFLLQ NIYQTICENP KYGSMRKRIG EVIDEDVIHS RAPFVACTQQ CFAIKPGIDG LLDVARRSFC DTSEAIHNLA
401: TKYREEFTLP NLKIPYNNRL GFYFIIPQRD ITEKLPNKFI QVVRHGKNVH CSSFELASLN VRNKSAAAEC FLRTELCLEG LISEIREDIR ILTMLAEVLC
501: LLDMIVNSFA YTISTKPVDR YTRPEFTGDG PMAINAGRHP ILESLHTDFV PNNIFLSEAS NMVLVMGPNM SGKSTYLQQI CLIVILAQVG CYVPAQFASL
601: RVVDRIFTRI GTGDNVENNS STFMTEMKET AFIMQNVSSR SLVVVDELGR ATSSSDGLAI AWSCCEHLLS LKGYTVFATH MEGLSELATM YPNVKVLHFE
701: VDLRNGRLDF KFRLKDGVRR VPHYGLLLAR VAGLPASVID NATSITSRIT EQEMVRMDAN CVQYQPLRMA YQAAQRLICL KYSNQGDDYI REALQDLKES
801: YAAGNLI
101: ASKKVTMARG CFDDTKGAVM VKNLSARDPS ALGLDTYCKQ YYLCLAAASA TIKWIESEKG VIITNHSLSV TFNGSFDHMN IDSTSVQTLE IIDPLHTELW
201: GTSNKKKSLF QMLKTTKTTG GSRLLRANLL QPLKDIQTIN ARLDCLDELV SNEELFFGLT QGLRKFPKES DKVLCHFCFK PKKVTDEVLK PANGRKSQLL
301: ISDIIVLKTA LDAIPFLSKV LKGANSFLLQ NIYQTICENP KYGSMRKRIG EVIDEDVIHS RAPFVACTQQ CFAIKPGIDG LLDVARRSFC DTSEAIHNLA
401: TKYREEFTLP NLKIPYNNRL GFYFIIPQRD ITEKLPNKFI QVVRHGKNVH CSSFELASLN VRNKSAAAEC FLRTELCLEG LISEIREDIR ILTMLAEVLC
501: LLDMIVNSFA YTISTKPVDR YTRPEFTGDG PMAINAGRHP ILESLHTDFV PNNIFLSEAS NMVLVMGPNM SGKSTYLQQI CLIVILAQVG CYVPAQFASL
601: RVVDRIFTRI GTGDNVENNS STFMTEMKET AFIMQNVSSR SLVVVDELGR ATSSSDGLAI AWSCCEHLLS LKGYTVFATH MEGLSELATM YPNVKVLHFE
701: VDLRNGRLDF KFRLKDGVRR VPHYGLLLAR VAGLPASVID NATSITSRIT EQEMVRMDAN CVQYQPLRMA YQAAQRLICL KYSNQGDDYI REALQDLKES
801: YAAGNLI
001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL
Arabidopsis Description
MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.