Factsheet for GSMUA_Achr8P08020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0486000-02	Rice	cytosol	78.54	48.62
TraesCS2A01G171900.1	Wheat	cytosol	77.33	47.16
TraesCS2B01G198300.1	Wheat	cytosol	76.92	47.09
EER99382	Sorghum	cytosol	75.71	46.58
HORVU2Hr1G031870.17	Barley	cytosol	77.13	46.24
Zm00001d006382_P004	Maize	cytosol	69.23	40.47
GSMUA_Achr6P13480_001	Banana	cytosol	13.97	26.85
GSMUA_Achr6P29480_001	Banana	cytosol	16.6	22.1
GSMUA_AchrUn_...	Banana	nucleus	22.87	16.33
GSMUA_Achr1P01790_001	Banana	mitochondrion	7.29	16.14
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	15.59	12.85
GSMUA_Achr1P01780_001	Banana	nucleus	4.66	12.43
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	7.09	10.97
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	23.68	10.5
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	24.09	9.33
GSMUA_Achr6P13490_001	Banana	cytosol	11.74	8.8
GSMUA_Achr8P08030_001	Banana	cytosol	4.66	7.72
GSMUA_Achr7P04320_001	Banana	plastid	12.15	6.59
GSMUA_Achr6P29470_001	Banana	mitochondrion	2.83	3.12
GSMUA_AchrUn_...	Banana	plastid	0.81	1.06
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	0.4	0.88
GSMUA_Achr1P01820_001	Banana	plastid	0.4	0.85
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr8G08020_001	EnsemblPlants:GSMUA_Achr8P08020_001	EnsemblPlants:GSMUA_Achr8T08020_001	UniProt:M0TNK5
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0002956029	:	:	:

Description

Putative MutS protein homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G08020_001]

Coordinates

chr8:-:5362795..5380335

Molecular Weight (calculated)

55665.3 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.073

Length

494 amino acids

Sequence
(BLAST)

001: MDLGLCWLES CRSLRININN IWCGPPVKTY HKTTKIGDVI DEDVAHARAP FIACTQQCFA IKSGIDGLLD VARRSFCDTS EAIHNLANKY REKFKLPNLK
101: IPYNNRQGFY FSIPQKDISG KLPDKFIQVM KHGKNIHCSS FELASLNVRN KSAAVECFMR TEIFLEGLID VIRNDISILT LLAEVLNLLD MIVNSFAHVI
201: STKPVDRYTR PEFTDNGPVA IDAGRHPILE SLHSDFVPNN LFLSEASNMV IVTGPNMSGK STYLQQVCLI IILAQIGCYV PARFASLRVV DRIFTRIGTG
301: DNVENNSSTF MTEMKETAFL MQNVSPKSLI VMDELGRATS SSDGFAIAWS CCEHLLSLNA YTIFATHMEG LSEMATIYPN VKILHFEVDL RNNRLDFKFH
401: LKDGPRHVPH YGLLLAGVAG LPSSVVETAR IITAKIAEED VKRMDINREQ FHSIQVAYQV VQKLICLKYS NQSEDYIRQA LQNLKENFTN ERSN

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.