Factsheet for GSMUA_Achr8P08030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0229g00200.t01	Wine grape	cytosol	19.8	40.97
Bra035922.1-P	Field mustard	cytosol	22.82	40.24
Bra035923.1-P	Field mustard	cytosol	20.47	39.87
Bra035921.1-P	Field mustard	cytosol	45.97	36.63
CDY59535	Canola	cytosol	16.11	34.53
CDX76575	Canola	cytosol	16.11	34.53
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	73.49	27.65
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	72.48	27.27
KRH28123	Soybean	cytosol	71.81	26.95
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	7.38	9.69
GSMUA_Achr6P29470_001	Banana	mitochondrion	14.09	9.38
GSMUA_Achr6P13490_001	Banana	cytosol	10.74	4.86
GSMUA_Achr8P08020_001	Banana	cytosol	7.72	4.66
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	16.78	4.49
GSMUA_AchrUn_...	Banana	nucleus	10.4	4.48
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	15.44	3.61
GSMUA_Achr1P01820_001	Banana	plastid	2.01	2.55
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	2.68	2.51
GSMUA_AchrUn_...	Banana	plastid	3.02	2.39
GSMUA_Achr1P01780_001	Banana	nucleus	1.34	2.16
GSMUA_Achr7P04320_001	Banana	plastid	4.7	1.54
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	2.01	1.42
GSMUA_Achr1P01790_001	Banana	mitochondrion	0.67	0.9
GSMUA_Achr6P13480_001	Banana	cytosol	0.67	0.78
GSMUA_Achr6P29480_001	Banana	cytosol	0.67	0.54
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	0.67	0.33
GSMUA_Achr8P12760_001	Banana	cytosol	0.0	0.0
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr8G08030_001	EnsemblPlants:GSMUA_Achr8P08030_001	EnsemblPlants:GSMUA_Achr8T08030_001
UniProt:M0TNK6	PFAM:PF05192	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SUPFAM:SSF48334	TMHMM:TMhelix
UniParc:UPI000294ACC3	SEG:seg	:	:	:	:

Description

Putative MutS protein homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G08030_001]

Coordinates

chr8:-:5403626..5412070

Molecular Weight (calculated)

33642.6 Da

IEP (calculated)

9.777

GRAVY (calculated)

0.156

Length

298 amino acids

Sequence
(BLAST)

001: MVIIVPPTKL SADHMVGVTE LVDKYYASNK KVTLPRGCFD DTKGAVLVKS LAAKELSVLG LGTFHKQYYL CLAAAAATIK WIEAEKGVIV INRSLLVTFN
101: GSFDHMNIDA TSVQNLEIID PLHSELWSTS NKKRSLFQML KTTKTVGGAR LLRANLLQPL KDIETINARL DCLDELMSNE ELFFGLSQSL RKFPKETDKV
201: LCRFCFKPKK VTEEVLRPAN GRKIQILISD IIVLKTALDA LPFLCKVLKD AKSLLLHNIY RTVCENKNYE GMRKRFVLLT FSVFCSFSAF KFVFAIFF

Best Arabidopsis Sequence Match ( AT4G17380.2 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKVLS
701: VFLSYEFETL GTAAECYIVL ISFNCEMEPY MFHIMAFY

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.