Factsheet for Bra035921.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035923.1-P	Field mustard	cytosol	31.02	75.82
Bra035922.1-P	Field mustard	cytosol	33.42	73.96
VIT_00s0229g00200.t01	Wine grape	cytosol	24.87	64.58
GSMUA_Achr8P08030_001	Banana	cytosol	36.63	45.97
Bra021052.1-P	Field mustard	cytosol	91.44	43.18
KRH28123	Soybean	cytosol	68.72	32.37
TraesCS2B01G198300.1	Wheat	cytosol	66.58	30.86
Os07t0486000-02	Rice	cytosol	65.78	30.83
EER99382	Sorghum	cytosol	66.04	30.76
TraesCS2A01G171900.1	Wheat	cytosol	66.31	30.62
HORVU2Hr1G031870.17	Barley	cytosol	66.04	29.98
Zm00001d006382_P004	Maize	cytosol	64.71	28.64
Bra001709.1-P	Field mustard	nucleus	14.71	5.87
Bra035777.1-P	Field mustard	cytosol	12.3	5.44
Bra019156.1-P	Field mustard	plastid	12.83	4.43
Bra028373.1-P	Field mustard	mitochondrion, plastid	11.76	3.97
Bra000896.1-P	Field mustard	plastid	11.76	3.29
Bra015033.1-P	Field mustard	mitochondrion	8.02	2.67
Bra022693.1-P	Field mustard	plastid	4.01	1.87
Bra022497.1-P	Field mustard	plastid	2.67	1.13
Bra028327.1-P	Field mustard	extracellular, vacuole	0.0	0.0
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	EnsemblPlantsGene:Bra035921	EnsemblPlants:Bra035921.1	EnsemblPlants:Bra035921.1-P	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0030983	UniProt:M4F4C1	PFAM:PF05190	PFAM:PF05192	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21
SUPFAM:SSF48334	TMHMM:TMhelix	UniParc:UPI0002542024	SEG:seg	:	:

Description

AT4G17380 (E=9e-091) MSH4, ATMSH4 | MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding

Coordinates

chrA09:+:2889178..2891970

Molecular Weight (calculated)

42375.5 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.022

Length

374 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVVGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT NTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKLLLLLLSN GVYILNFFFA SLHYEFGIFE ILSFGCVMSR IEAEKGVIVT NHSLTPLKDI KTINTRLNCL DELMSNEELF YGLSQVLRKF PKETDRVLCH
201: FCYKPKKVTE AVLGFDNTRR SQNMISSIIL LKTALDALPL LAMALKDAKC FLLANIYKTV CENDRYASIR KRVGEVIDDD VLHARVPFVA RSQQCFALKA
301: GIDGFLDMAR RTFCDTSEAI HNLARKYREE FNLPNLKLPF NNRQGFFFRI SQKEVQGKLP SKFTQVKNAL PLEA

Best Arabidopsis Sequence Match ( AT4G17380.2 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKVLS
701: VFLSYEFETL GTAAECYIVL ISFNCEMEPY MFHIMAFY

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.