Factsheet for Bra019156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50199	Canola	plastid	96.4	97.21
CDX92716	Canola	plastid	95.3	94.6
AT4G25540.1	Thale cress	nucleus, plastid	84.59	84.83
VIT_16s0100g01310.t01	Wine grape	plastid	64.58	63.01
KRG91481	Soybean	plastid	60.98	61.78
KRH35336	Soybean	cytosol	23.99	61.18
Solyc03g025890.1.1	Tomato	nucleus	60.98	59.18
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	25.0	57.66
VIT_00s0388g00030.t01	Wine grape	plastid	25.37	56.12
TraesCS2D01G352400.1	Wheat	cytosol	48.52	54.0
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	52.12	53.66
HORVU2Hr1G085940.21	Barley	cytosol	42.62	52.92
EES11671	Sorghum	plastid	53.41	52.64
TraesCS2B01G372300.1	Wheat	plastid	53.14	52.17
Zm00001d026647_P005	Maize	nucleus	52.68	42.68
Bra028327.1-P	Field mustard	extracellular, vacuole	5.35	35.15
Bra001709.1-P	Field mustard	nucleus	19.56	22.63
Bra021052.1-P	Field mustard	cytosol	15.68	21.46
Bra000896.1-P	Field mustard	plastid	25.28	20.49
Bra035777.1-P	Field mustard	cytosol	15.59	20.0
Bra028373.1-P	Field mustard	mitochondrion, plastid	19.65	19.21
Bra022693.1-P	Field mustard	plastid	10.61	14.34
Bra015033.1-P	Field mustard	mitochondrion	13.75	13.28
Bra035921.1-P	Field mustard	cytosol	4.43	12.83
Bra035922.1-P	Field mustard	cytosol	1.94	12.43
Bra035923.1-P	Field mustard	cytosol	1.75	12.42
Bra022497.1-P	Field mustard	plastid	9.5	11.63
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.2	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra019156
EnsemblPlants:Bra019156.1	EnsemblPlants:Bra019156.1-P	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151	InterPro:IPR036678
UniProt:M4DRL3	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188
PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF122
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF55271	UniParc:UPI0002541143
SEG:seg	:	:	:	:	:

Description

AT4G25540 (E=0.0) MSH3, ATMSH3 | MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding

Coordinates

chrA03:-:26009980..26015134

Molecular Weight (calculated)

119551.0 Da

IEP (calculated)

7.037

GRAVY (calculated)

-0.184

Length

1084 amino acids

Sequence
(BLAST)

0001: MGKQKQQVIS RFFAPKPKPS PPPNQESSTP PPKISATVSF SPSKRKLLSD HLAAASPKKP KPSQNPTPKP DPNLHRRFLQ RFLEPPPEEE SLPVTTSIKY
0101: TPLEQQVVEL KRKHPDVILM VEVGYRYRFF GEDAEIAARV LGIYAHMDHS FMTASVPTFR LNVHVRRLVN AGYKVGVVKQ TETAAIKSHG ANRAGPFFRG
0201: LSGLYTKATL EAAEDISGGC VGEEGFGGQS NFLVCVVDER VDRESNKGCG LEASFDVRVG VVGVEISTGE VVHGEFNDNF MRSGLEAVVL SLSPAELLLG
0301: QPLSQQTEKF LLGYAGPTSN VRVERAALDR FRNGSAVDEI VSIYEDLSAR NIEDDKENKV EAAEEKISRL TVHTIMNMPH LTVKALALTL RHLKQFGFER
0401: ILFEGASIRS LSSTTEMTLS ANTLQQLEVI RNNSDGSESG SLFHNMNQTL TVYGSRLLRH WVTHPLCDRN LISARLDAVS EIVACMGSPS SSQVSDELGE
0501: ESSERKIIPP EFYHVLSSVL TALSRSPDIQ RGITRIFHRT AKATEFIAVI EAILLAGKQL QRLGIKQDCE TRSMQSATVR SSLLRKLISV VSSPAVVDNA
0601: AKLLSALNKE GAARGDLLDI LITSSNQFPE LAEARQALLA VREKLDSLIV SYRKKLANRN LEFLEVSGIT HLIEVPVDAK VPINWVKVNS TKKTIRYHPP
0701: EIVSGLDELA LATEHLAIVN RASWDSFLKS FARYYTDFEA AVQALAALDC LHSLATLSRN KNYICPLFVD DSEPVEINIQ SGRHPVLETI LQDNFVPNDT
0801: SLHAEREYCQ IITGPNMGGK SCYIRQVALI SIMAQVGSFV PASFAKLHVL DGVFTRMGAT DSIQHGRSTF LEDLSEASHI IRTCSSRSLV IIDELGRGTS
0901: THDGVAIAYA TLQHLLVEKR CLVLFVTHYP EIAELSNSFP VSAGTYHVSY LTSQKDNGGS DHNDVTYLYK LVRGLCNRSF GFKVAQLAQI PPSCIHRAIT
1001: MAANLEAEVR ARERNTVSSI KHLMESPGEP KAHDEPPESR TEESMSVLGD LFADLRCALS EDDPSKSFKL LKDAWKIAED LVAR

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.