Factsheet for VIT_00s0388g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 2
cytosol 1
plasma membrane 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	93.47	97.45
VIT_16s0100g01310.t01	Wine grape	plastid	85.51	37.71
KRG91481	Soybean	plastid	57.76	26.45
Solyc03g025890.1.1	Tomato	nucleus	59.59	26.14
AT4G25540.1	Thale cress	nucleus, plastid	56.94	25.81
CDY50199	Canola	plastid	55.92	25.49
Bra019156.1-P	Field mustard	plastid	56.12	25.37
CDX92716	Canola	plastid	55.92	25.09
EES11671	Sorghum	plastid	46.12	20.55
TraesCS2B01G372300.1	Wheat	plastid	45.51	20.2
TraesCS2B01G372400.1	Wheat	mitochondrion, plastid	43.06	20.04
TraesCS2D01G352400.1	Wheat	cytosol	36.12	18.17
Zm00001d026647_P005	Maize	nucleus	45.31	16.59
HORVU2Hr1G085940.21	Barley	cytosol	22.24	12.49
VIT_00s0229g00200.t01	Wine grape	cytosol	2.65	9.03
VIT_11s0016g04090.t01	Wine grape	nucleus	19.39	8.45
VIT_07s0005g01370.t01	Wine grape	plastid	21.84	8.25
KRH35336	Soybean	cytosol	6.53	7.53
VIT_17s0000g04170.t01	Wine grape	cytosol	13.27	6.88
VIT_05s0049g02090.t01	Wine grape	mitochondrion	11.43	4.9
VIT_19s0090g00670.t01	Wine grape	cytosol	6.73	4.16
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	6.12	3.67
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	1.22	2.31
EES13125	Sorghum	cytosol	0.0	0.0

Protein Annotations

EntrezGene:104878373	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	MapMan:35.1	ProteinID:CBI37346	ProteinID:CBI37346.3
UniProt:D7U3M7	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mmatch_repair_MutS_con_dom	EMBL:FN596503	GO:GO:0000166
GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0008171	GO:GO:0009987	GO:GO:0015074	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016740	GO:GO:0016787	GO:GO:0030983	GO:GO:0032259	GO:GO:0032300	GO:GO:0043570
InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	PFAM:PF01624	PFAM:PF05188	PANTHER:PTHR11361
PANTHER:PTHR11361:SF122	SUPFAM:SSF53150	SUPFAM:SSF55271	TMHMM:TMhelix	UniParc:UPI0001BE4AF6	ArrayExpress:VIT_00s0388g00030
EnsemblPlantsGene:VIT_00s0388g00030	EnsemblPlants:VIT_00s0388g00030.t01	RefSeq:XP_010646928.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:27003641..27007080

Molecular Weight (calculated)

53981.1 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.016

Length

490 amino acids

Sequence
(BLAST)

001: MGKQKQQVIS RFFAPKSKAP SSSSSSIPSS PSPSPSPSSL PNPPTPPPKI STTVTFSPSK RLPSSHVSPS TKPPKAPKIS HPIDPSLHQK FVQKLLQPSS
101: STPTKLPLPT TKYTPLEQQV VDLKQKYPDV LLMVEVGYRY RFFGEDAEIA ARVLGIYAHV DHNFLTASIP TFRLNVHVRR LVSAGFKVGV VKQTETAAIK
201: AHGSNKLGPF CRGLSALYTK ATLEAAEDVG GGEEECGSYN NYLVCVVEKG ISVENSKDCG VGGGFDVRIG IVAVEVSTGD VVHGKFNDNF MRAGLEAVIL
301: SMSPAELLLG YPLSKQTEKL LLAYAGPASN VRLERTSRDC FSDGGALAEV MSLYENLSED SRVDHQVDNT EVMEQENHCL AIEVLVFVDF LVSGTKQYEL
401: LLLWTYIFIL ATNHLLCEIC ECSLWFWYSL GFMNCLIIGW SMWGPSPITT FSGHCWFVIF VDDCNRMTLL YQMKTKAEVF MIFQAFHAMV

Best Arabidopsis Sequence Match ( AT4G25540.1 )
(BLAST)

0001: MGKQKQQTIS RFFAPKPKSP THEPNPVAES STPPPKISAT VSFSPSKRKL LSDHLAAASP KKPKLSPHTQ NPVPDPNLHQ RFLQRFLEPS PEEYVPETSS
0101: SRKYTPLEQQ VVELKSKYPD VVLMVEVGYR YRFFGEDAEI AARVLGIYAH MDHNFMTASV PTFRLNFHVR RLVNAGYKIG VVKQTETAAI KSHGANRTGP
0201: FFRGLSALYT KATLEAAEDI SGGCGGEEGF GSQSNFLVCV VDERVKSETL GCGIEMSFDV RVGVVGVEIS TGEVVYEEFN DNFMRSGLEA VILSLSPAEL
0301: LLGQPLSQQT EKFLVAHAGP TSNVRVERAS LDCFSNGNAV DEVISLCEKI SAGNLEDDKE MKLEAAEKGM SCLTVHTIMN MPHLTVQALA LTFCHLKQFG
0401: FERILYQGAS FRSLSSNTEM TLSANTLQQL EVVKNNSDGS ESGSLFHNMN HTLTVYGSRL LRHWVTHPLC DRNLISARLD AVSEISACMG SHSSSQLSSE
0501: LVEEGSERAI VSPEFYLVLS SVLTAMSRSS DIQRGITRIF HRTAKATEFI AVMEAILLAG KQIQRLGIKQ DSEMRSMQSA TVRSTLLRKL ISVISSPVVV
0601: DNAGKLLSAL NKEAAVRGDL LDILITSSDQ FPELAEARQA VLVIREKLDS SIASFRKKLA IRNLEFLQVS GITHLIELPV DSKVPMNWVK VNSTKKTIRY
0701: HPPEIVAGLD ELALATEHLA IVNRASWDSF LKSFSRYYTD FKAAVQALAA LDCLHSLSTL SRNKNYVRPE FVDDCEPVEI NIQSGRHPVL ETILQDNFVP
0801: NDTILHAEGE YCQIITGPNM GGKSCYIRQV ALISIMAQVG SFVPASFAKL HVLDGVFTRM GASDSIQHGR STFLEELSEA SHIIRTCSSR SLVILDELGR
0901: GTSTHDGVAI AYATLQHLLA EKRCLVLFVT HYPEIAEISN GFPGSVGTYH VSYLTLQKDK GSYDHDDVTY LYKLVRGLCS RSFGFKVAQL AQIPPSCIRR
1001: AISMAAKLEA EVRARERNTR MGEPEGHEEP RGAEESISAL GDLFADLKFA LSEEDPWKAF EFLKHAWKIA GKIRLKPTCS F

Arabidopsis Description

MSH3DNA mismatch repair protein MSH3 [Source:UniProtKB/Swiss-Prot;Acc:O65607]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.