Factsheet for VIT_16s0098g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72584	Soybean	plastid	62.47	64.68
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.36	63.68
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	41.69	63.03
Solyc03g080010.2.1	Tomato	plastid	57.7	57.14
AT5G54090.1	Thale cress	plastid	53.06	54.52
KRH16964	Soybean	cytosol, nucleus	11.0	54.22
Os10t0509000-01	Rice	cytosol, nucleus	35.33	53.32
CDY28796	Canola	plastid	50.61	51.62
Bra022693.1-P	Field mustard	plastid	50.49	51.5
CDY41773	Canola	plastid	50.37	51.44
TraesCS1A01G179700.1	Wheat	plastid	50.73	49.88
TraesCS1B01G200700.1	Wheat	plastid	50.37	49.76
OQU91528	Sorghum	plastid	50.24	49.46
TraesCS1D01G178000.1	Wheat	plastid	50.24	49.4
HORVU1Hr1G047640.7	Barley	plastid	50.61	47.42
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	18.46	47.34
GSMUA_Achr1P01820_001	Banana	plastid	12.71	44.26
Zm00001d013887_P002	Maize	plastid	45.84	43.96
VIT_17s0000g04170.t01	Wine grape	cytosol	12.96	11.22
VIT_05s0049g02090.t01	Wine grape	mitochondrion	14.79	10.58
VIT_19s0090g00670.t01	Wine grape	cytosol	10.15	10.47
VIT_16s0100g01310.t01	Wine grape	plastid	13.69	10.08
VIT_07s0005g01370.t01	Wine grape	plastid	15.77	9.95
VIT_11s0016g04090.t01	Wine grape	nucleus	13.2	9.61
VIT_00s0388g00030.t01	Wine grape	plastid	3.67	6.12
VIT_00s0485g00020.t01	Wine grape	mitochondrion, plastid	3.3	5.74
VIT_00s0229g00200.t01	Wine grape	cytosol	0.61	3.47
VIT_00s0229g00210.t01	Wine grape	endoplasmic reticulum, golgi	1.1	3.46

Protein Annotations

EntrezGene:100241843	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB48109	ProteinID:CCB48109.1	ncoils:Coil
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	UniProt:F6H7A2	EMBL:FN595247	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983	GO:GO:0032300
GO:GO:0045910	GO:GO:0090305	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488	PIRSF:PIRSF005814
ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334
SUPFAM:SSF52540	UniParc:UPI0002107EB2	ArrayExpress:VIT_16s0098g00680	EnsemblPlantsGene:VIT_16s0098g00680	EnsemblPlants:VIT_16s0098g00680.t01	RefSeq:XP_010662945.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:21065001..21076221

Molecular Weight (calculated)

90236.3 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.301

Length

818 amino acids

Sequence
(BLAST)

001: MNSCACGKSI FMIVSVASTP ERFKNGGILK QSQKPSVHHQ TLRVLEWDKL CHSVSSFAST SLGRESTWAQ LWSLDQTYQE SLRLLDETNA ALEIHKHGGC
101: TMDFSTIDAV LVKSAIQHAR RMLPVDGNEA MAVVALLQLA ETLQLNLKAA IKEDADWYKR FMPISEVIMG LVINRSLVKL IQQVVDEDGS VKDSASSALK
201: QSRDQVRTLE RKLYQLMDSL VRNNVNETSS LEVSNVDGRW CIKSGANLTN LKGLLLSSGS GVGSIIEPLS AIPLNDELQK ARALAAKAEA DVLLKLTEKM
301: QMDLEDIEKL LDSVIQLDVI NARATYGLSF GGTCPDLFLA ENKNGSSTGA HLSGHGTSEA SYPIKREWTL HLPKAYHPLL VQQHRENLQK ARKDVSLAIS
401: EQRRKKLQGE KFNVKEETDI NLSSLEMQVT RLEQSPPVPV DFFIAQRTRV LVITGPNTGG KTICLKTVGL AAMMARSGLH VLAAEPVRIP WFDYVFADIG
501: DEQSLSQSLS TFSGHLKQIS DIKAQSTNQS LVLLDEVGAG TNPLEGAALG MSLLESFAET GALLTIATTH HSELKTLKYS NDAFENACME FDEVNLKPTY
601: KILWGIPGRS NAINIAERLG VPKKVLDKAR EQYGAASAEI NEVIIDMERF KQEFQERVND ARYYLMLSRD LYENLLVTKR KLMEHGTNQR YGKMREVSEA
701: AAVARSLLHK KVRQLRSSAT RPSQPTAADK SQHASATSNQ HTAADINERP TTSESKHPAK VAQQSSSEKK RVPKVGDMVH VSSLGKKATV LEVESSKGQL
801: VVQAGNMKLK LKLTDVET

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.