Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41773 | Canola | plastid | 85.55 | 85.02 |
| CDY28796 | Canola | plastid | 85.43 | 84.79 |
| Bra022693.1-P | Field mustard | plastid | 85.43 | 84.79 |
| GSMUA_Achr1P01790_001 | Banana | mitochondrion | 18.09 | 64.57 |
| KRH16965 | Soybean | cytosol, mitochondrion, nucleus, plastid | 37.81 | 55.64 |
| KRH72584 | Soybean | plastid | 53.89 | 54.3 |
| VIT_16s0098g00680.t01 | Wine grape | cytosol, plastid | 54.52 | 53.06 |
| Solyc03g080010.2.1 | Tomato | plastid | 50.88 | 49.03 |
| Os10t0509000-01 | Rice | cytosol, nucleus | 33.29 | 48.89 |
| OQU91528 | Sorghum | plastid | 48.49 | 46.45 |
| TraesCS1B01G200700.1 | Wheat | plastid | 47.74 | 45.89 |
| TraesCS1A01G179700.1 | Wheat | plastid | 47.74 | 45.67 |
| TraesCS1D01G178000.1 | Wheat | plastid | 47.11 | 45.07 |
| HORVU1Hr1G047640.7 | Barley | plastid | 47.36 | 43.18 |
| Zm00001d013887_P002 | Maize | plastid | 43.59 | 40.68 |
| GSMUA_Achr1P01810_001 | Banana | extracellular, plasma membrane | 15.83 | 39.5 |
| GSMUA_Achr1P01820_001 | Banana | plastid | 11.43 | 38.72 |
| KRH16964 | Soybean | cytosol, nucleus | 7.41 | 35.54 |
| AT1G65070.2 | Thale cress | plastid | 26.26 | 23.86 |
| AT3G24320.1 | Thale cress | mitochondrion | 15.58 | 11.09 |
| AT3G20475.1 | Thale cress | cytosol | 11.18 | 11.03 |
| AT3G18524.1 | Thale cress | nucleus | 12.94 | 10.99 |
| AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 10.93 | 10.98 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 13.94 | 10.27 |
| AT3G24495.1 | Thale cress | mitochondrion | 13.94 | 10.01 |
| AT4G02070.1 | Thale cress | plastid | 14.57 | 8.76 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:835495 | ProteinID:AED96449.1 | ArrayExpress:AT5G54090 | EnsemblPlantsGene:AT5G54090 |
| RefSeq:AT5G54090 | TAIR:AT5G54090 | RefSeq:AT5G54090-TAIR-G | EnsemblPlants:AT5G54090.1 | TAIR:AT5G54090.1 | Unigene:At.72265 |
| ncoils:Coil | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | UniProt:F4JYU0 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008094 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0030983 | GO:GO:0032300 |
| GO:GO:0045910 | GO:GO:0090305 | InterPro:MutS2 | RefSeq:NP_200220.2 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PIRSF:PIRSF005814 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF81 |
| SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | UniParc:UPI0001E93036 | SEG:seg |
Description
DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
Coordinates
chr5:-:21948124..21952594
Molecular Weight (calculated)
87967.8 Da
IEP (calculated)
8.857
GRAVY (calculated)
-0.248
Length
796 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.