Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65220 | Canola | cytosol | 92.32 | 92.89 |
| Bra035777.1-P | Field mustard | cytosol | 90.21 | 86.15 |
| CDY19637 | Canola | cytosol | 90.83 | 86.13 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 76.08 | 77.43 |
| KRH14375 | Soybean | cytosol | 72.49 | 72.04 |
| KRH73763 | Soybean | cytosol | 71.75 | 71.48 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 32.59 | 70.89 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 44.36 | 70.06 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 52.79 | 67.41 |
| OQU78247 | Sorghum | cytosol | 64.93 | 66.75 |
| TraesCS1D01G316200.1 | Wheat | cytosol | 66.79 | 65.97 |
| Os05t0498300-01 | Rice | cytosol | 65.92 | 65.76 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 66.17 | 65.28 |
| Solyc10g018540.1.1 | Tomato | cytosol | 27.51 | 64.72 |
| TraesCS1B01G328200.1 | Wheat | cytosol | 42.13 | 64.15 |
| Zm00001d000329_P002 | Maize | cytosol | 35.44 | 62.58 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 32.22 | 58.04 |
| AT4G17380.1 | Thale cress | cytosol, nucleus, plasma membrane | 17.72 | 18.06 |
| AT3G18524.1 | Thale cress | nucleus | 20.45 | 17.61 |
| AT4G25540.1 | Thale cress | nucleus, plastid | 21.31 | 15.91 |
| AT4G02070.1 | Thale cress | plastid | 21.07 | 12.84 |
| AT3G24495.1 | Thale cress | mitochondrion | 16.85 | 12.26 |
| AT5G54090.1 | Thale cress | plastid | 11.03 | 11.18 |
| AT3G24320.1 | Thale cress | mitochondrion | 14.25 | 10.29 |
| AT1G65070.2 | Thale cress | plastid | 10.16 | 9.36 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.2 | Gene3D:3.40.50.300 | EntrezGene:821593 | ProteinID:AEE76384.1 | EMBL:AK221687 |
| EMBL:AK230222 | ArrayExpress:AT3G20475 | EnsemblPlantsGene:AT3G20475 | RefSeq:AT3G20475 | TAIR:AT3G20475 | RefSeq:AT3G20475-TAIR-G |
| EnsemblPlants:AT3G20475.1 | TAIR:AT3G20475.1 | Symbol:ATMSH5 | Unigene:At.50208 | ProteinID:BAB02831.1 | EMBL:BT012280 |
| InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_core | InterPro:DNA_mismatch_repair_MutS_sf | EMBL:EF471448 | UniProt:F4JEP5 |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000712 | GO:GO:0000794 | GO:GO:0000795 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008094 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010777 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030983 |
| GO:GO:0043073 | GO:GO:0045143 | GO:GO:0051026 | GO:GO:0051321 | RefSeq:NP_188683.3 | InterPro:P-loop_NTPase |
| PFAM:PF00488 | PFAM:PF05192 | PIRSF:PIRSF005813 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007006 | PO:PO:0009046 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00486 | PANTHER:PTHR11361 |
| PANTHER:PTHR11361:SF20 | SMART:SM00533 | SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | UniParc:UPI0001739276 |
Description
MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
Coordinates
chr3:+:7143442..7151047
Molecular Weight (calculated)
91127.9 Da
IEP (calculated)
4.895
GRAVY (calculated)
-0.003
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.