Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G328200.1 | Wheat | cytosol | 63.77 | 98.3 |
| TraesCS1A01G315900.1 | Wheat | cytosol | 98.41 | 98.29 |
| HORVU1Hr1G066830.9 | Barley | cytosol | 75.64 | 97.78 |
| OQU78247 | Sorghum | cytosol | 86.05 | 89.55 |
| Os05t0498300-01 | Rice | cytosol | 87.39 | 88.26 |
| Zm00001d000329_P002 | Maize | cytosol | 46.14 | 82.49 |
| GSMUA_Achr6P29480_001 | Banana | cytosol | 35.5 | 78.17 |
| VIT_19s0090g00670.t01 | Wine grape | cytosol | 68.3 | 70.37 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 41.98 | 67.12 |
| AT3G20475.1 | Thale cress | cytosol | 65.97 | 66.79 |
| KRH73763 | Soybean | cytosol | 65.73 | 66.3 |
| KRH14375 | Soybean | cytosol | 65.48 | 65.89 |
| GSMUA_Achr6P29470_001 | Banana | mitochondrion | 35.99 | 65.62 |
| CDY65220 | Canola | cytosol | 64.01 | 65.21 |
| Solyc10g018540.1.1 | Tomato | cytosol | 26.07 | 62.1 |
| CDY19637 | Canola | cytosol | 63.4 | 60.87 |
| Bra035777.1-P | Field mustard | cytosol | 62.91 | 60.83 |
| TraesCS2D01G352400.1 | Wheat | cytosol | 20.69 | 17.35 |
| TraesCS1D01G131600.3 | Wheat | nucleus | 19.58 | 16.99 |
| TraesCS5D01G212500.1 | Wheat | nucleus | 20.56 | 14.76 |
| TraesCS3D01G119400.1 | Wheat | mitochondrion | 18.24 | 12.19 |
| TraesCS1D01G178000.1 | Wheat | plastid | 10.77 | 10.58 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 13.95 | 10.11 |
| TraesCS2D01G565200.1 | Wheat | plastid | 10.04 | 8.94 |
Protein Annotations
| Gene3D:1.10.1420.10 | MapMan:13.3.6.5.1.2.2 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_Msh2 | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_core |
| InterPro:DNA_mismatch_repair_MutS_sf | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000712 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006298 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030983 | GO:GO:0045143 | GO:GO:0051026 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF05192 | PIRSF:PIRSF005813 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF20 | SMART:SM00533 |
| SMART:SM00534 | SUPFAM:SSF48334 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS1D01G316200 | EnsemblPlants:TraesCS1D01G316200.1 | TIGR:cd03281 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:411557837..411577180
Molecular Weight (calculated)
91843.5 Da
IEP (calculated)
4.858
GRAVY (calculated)
-0.054
Length
817 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDDEEQLE EEEEVAETGI DSQVHMACVM QGRRVGVSYY DSNTRQLFVL EIWEDSAGGF PLIDLVKCQA KPSTIYASTK TEEELLSALQ RNDSNDDPPV
101: VKLMKSSTFT YEQAWHRLIY LKVAAMDDGL SVKERICFLN SMMDLGSDVQ VRAAGGLLAI LDSERLLDTL EQMEGGASIA IDSVAQISLD RFLKLDAAAH
201: EALHIFQVDK HPSYMGIGRA KEGFSVFGIL NKCVTPMGRR LLRAWFLRPI IDIDVINNRL NTISFFLCCE EVMSALRETL KSVRDVPHML KKFNSPSSSC
301: TSSDWHTFLK CICSLLHINK IFEVGISEHL ANKLQHMSID LVEKANSSIT AELDYVSNLV IGVIDVQRSK EKGYETLVKE NLCDELDELR MVYEGLPDFL
401: EQVSANENAS FPFSLECRKA PLIVYVHQIG YLMCFFDEKI SEALLIGLQD FEFAFSEDGE ERRFYYHTQK TRELDNLLGD IYHKILDMER AIIRDLVCRV
501: LQFLPQLTKA VNFAAELDCI LSLAIVARQN NYVRPILTED SILEIRNGRH ALQEMTVDTF VPNDTKIRSA GRINIITGPN YSGKSIYIKQ VALVVFLAHI
601: GSFVPADSAV VGLTDRIFCA MGSKSMTTEQ STFMIDLHQV GTMLRHATSR SLCLLDEFGK GTLTEDGIGL LGGTISHFAN YDYPPKVLLS THLTEIFTEN
701: YLPQSEHIKC CTMSVLNPDG QASNEDIIFL YRLVPGQALL SFGLHCAQLA GVPSEVIQRA ASVLEDIHSK RPVRRMICDN LAAKDKQYQD AMAKLLAFDP
801: RKGDLNHFFE DVFPPEA
101: VKLMKSSTFT YEQAWHRLIY LKVAAMDDGL SVKERICFLN SMMDLGSDVQ VRAAGGLLAI LDSERLLDTL EQMEGGASIA IDSVAQISLD RFLKLDAAAH
201: EALHIFQVDK HPSYMGIGRA KEGFSVFGIL NKCVTPMGRR LLRAWFLRPI IDIDVINNRL NTISFFLCCE EVMSALRETL KSVRDVPHML KKFNSPSSSC
301: TSSDWHTFLK CICSLLHINK IFEVGISEHL ANKLQHMSID LVEKANSSIT AELDYVSNLV IGVIDVQRSK EKGYETLVKE NLCDELDELR MVYEGLPDFL
401: EQVSANENAS FPFSLECRKA PLIVYVHQIG YLMCFFDEKI SEALLIGLQD FEFAFSEDGE ERRFYYHTQK TRELDNLLGD IYHKILDMER AIIRDLVCRV
501: LQFLPQLTKA VNFAAELDCI LSLAIVARQN NYVRPILTED SILEIRNGRH ALQEMTVDTF VPNDTKIRSA GRINIITGPN YSGKSIYIKQ VALVVFLAHI
601: GSFVPADSAV VGLTDRIFCA MGSKSMTTEQ STFMIDLHQV GTMLRHATSR SLCLLDEFGK GTLTEDGIGL LGGTISHFAN YDYPPKVLLS THLTEIFTEN
701: YLPQSEHIKC CTMSVLNPDG QASNEDIIFL YRLVPGQALL SFGLHCAQLA GVPSEVIQRA ASVLEDIHSK RPVRRMICDN LAAKDKQYQD AMAKLLAFDP
801: RKGDLNHFFE DVFPPEA
001: MEEMEDTETE PQVYMACIQH GRRVGVSYYD CSVRQLHVLE FWEEDCSDFT LINMVKYQAK PSIIYASTKS EESFVAALQQ NDGTDETTMV KLVKSSTFSY
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
101: EQAWHRLVYL RVTGMDDGLN IKERICYLSS MMDVGSEVQV RVSGGLLAIL ESERIVETLE QNESGSASIA IDSVMEVPLN KFLKLDAAAH EALQIFQTDK
201: HPSHMGIGRA KEGFSVFGMM NKCATPMGRR LLRSWFMRPI LDLEVLDRRL NAISFFISSV ELMASLRETL KSVKDISHLL KKFNSPTSLC TSNDWTAFLK
301: SISALLHVNK IFEVGVSESL REHMRRFNLD IIEKAGLCIS TELDYVYELV IGVIDVTRSK ERGYQTLVKE GFCAELDELR QIYEELPEFL QEVSAMELEH
401: FPHLHKEKLP PCIVYIQQIG YLMCIFGEKL DETALNRLTE FEFAFSDMDG ETQRFFYHTS KTRELDNLLG DIYHKILDME RAIIRDLLSH TLLFSAHLLK
501: AVNFVAELDC ILSLACVAHQ NNYVRPVLTV ESLLDIRNGR HVLQEMAVDT FIPNDTEIND NGRIHIITGP NYSGKSIYVK QVALIVFLSH IGSFVPADAA
601: TVGLTDRIFC AMGSKFMTAE QSTFMIDLHQ VGMMLRQATS RSLCLLDEFG KGTLTEDGIG LLGGTISHFA TCAEPPRVVV CTHLTELLNE SCLPVSEKIK
701: FYTMSVLRPD TESANMEEIV FLYRLIPGQT LLSYGLHCAL LAGVPEEVVK RAAIVLDAFE SNNNVDKLSL DKISSQDQAF KDAVDKFAEL DISKGDIHAF
801: FQDIFTS
Arabidopsis Description
MSH5DNA mismatch repair protein MSH5 [Source:UniProtKB/Swiss-Prot;Acc:F4JEP5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.