Factsheet for TraesCS2D01G359500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G379900.1	Wheat	mitochondrion	98.14	98.14
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	97.87	97.87
HORVU2Hr1G087660.5	Barley	plastid	95.66	91.99
Os04t0507000-01	Rice	mitochondrion	86.88	86.57
KXG26672	Sorghum	mitochondrion, nucleus	85.11	84.88
Zm00001d025816_P002	Maize	mitochondrion, nucleus	84.04	83.01
KRG90178	Soybean	mitochondrion	25.09	63.17
Solyc09g090870.2.1	Tomato	mitochondrion	63.39	62.88
VIT_05s0049g02090.t01	Wine grape	mitochondrion	63.74	62.85
Bra015033.1-P	Field mustard	mitochondrion	61.61	61.94
CDX77432	Canola	mitochondrion	61.52	61.85
CDY49227	Canola	mitochondrion	61.26	61.48
AT3G24320.1	Thale cress	mitochondrion	60.73	61.27
KRH33548	Soybean	nucleus	60.11	60.0
KRG90177	Soybean	cytosol	35.02	58.61
TraesCS2D01G352400.1	Wheat	cytosol	13.03	15.09
TraesCS5D01G212500.1	Wheat	nucleus	14.36	14.24
TraesCS1D01G316200.1	Wheat	cytosol	10.11	13.95
TraesCS1D01G178000.1	Wheat	plastid	10.2	13.82
TraesCS1D01G131600.3	Wheat	nucleus	10.9	13.06
TraesCS3D01G119400.1	Wheat	mitochondrion	14.1	13.01
TraesCS2D01G565200.1	Wheat	plastid	10.28	12.65

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:GIY-YIG_endonuc	InterPro:GIY-YIG_endonuc_sf	GO:GO:0000002	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030983	GO:GO:0032042
GO:GO:0042651	InterPro:IPR000305	InterPro:IPR016151	InterPro:IPR035901	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01541	PFAM:PF01624	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	SMART:SM00465
SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF55271	SUPFAM:SSF82771	EnsemblPlantsGene:TraesCS2D01G359500	EnsemblPlants:TraesCS2D01G359500.1
TIGR:cd03243	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:461374390..461391349

Molecular Weight (calculated)

124467.0 Da

IEP (calculated)

7.764

GRAVY (calculated)

-0.094

Length

1128 amino acids

Sequence
(BLAST)

0001: MQRLLASSVV AAAPRWLPVA DSILRRRRPR RSPLPIMLFN RSWSKPRKVS RSISMVSSKV NKQGDLCNEG MLSHIMWWKE RMESCRKPSC VQLTQRLVYS
0101: NILGLDPTLR NGSLKDGTLN MEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEHAGLN PFGGLRSDSI PKAGCPIMNL RQTLDDLTRC GYSVCIVEEI
0201: QGPTQARARK GRFISGHAHP GSPYVFGLAE VDHDLEFPDP MPVVGISRSA KGYCLISVLE TMKTYSAEEG LTEEAIVTKL RICRYHHLYL HSSLRNNSSG
0301: TSRWGEFGEG GLLWGECNGK SFDWFDGSPI DELLCKVREI YGLDEKTSFR NVTISLEGRP QPLYLGTATQ IGVIPTEGIP SLPKMLLPPN CAGLPSMYIR
0401: DLLLNPPSFD VASAIQEACR LMCSITCSIP EFTCIPSAKL VKLLESKEVN HIEFCRIKNV LDEIMLMNGN TELSAIQNKL LEPTSVVTGL KVDADILIKE
0501: CRFISKHIGE VISLAGESDQ AITSSEYIPK EFFNDMESSW KGRVKRVHAE EEFANVDVAA QALSTAVTED FLPIIVRVKA VMSSHGSSKG EISYAKEHGA
0601: VWFKGRRLTP TVWANTPGEE QIKQLKPAID SKGRRVGEEW FTTTKVENAL ARYHEACDNA KCKVLELLRG LSSELQDKIN ILVFCSTLLI ITKALFGHVS
0701: EGLRRGWVLP AIYPLSKDYS MEESSSEMDL LRLFPYWLDT NQGNAILNDV NMRSLFILTG PNGGGKSSML RSVCAAALLG VCGLMVPAAS AVIPHFDSIM
0801: LHMKAYDSPA DGKSSFQIEM SEIRSLVSRA TGRSLVLIDE ICRGTETAKG TCIAGSIIER LDDVGCLGIV STHLHGIFDL PLSLNNTDFK AMGAEVVNGC
0901: IQPTWRLMDG ICRESLAFQT ARKEGMPDLI IKRAEELYLT MSRSNKQTSS TAHHGPSVGY SNVNGLVGMP DSLGNMFEPP SGTFGLLRKD VESIVTAICK
1001: DKLLDLYNKR SISELVEVVC VTVGAREQPP PSTVGRSSIY IIIRRDNKLY VGQTDDLVGR LGAHRSKEGM QDATILYILV PGKSVACQLE TLLINQLPSK
1101: GFKLINKADG KHRNFGMSVT SGEAMAAH

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.