Factsheet for Os04t0507000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G359500.1	Wheat	mitochondrion	86.57	86.88
TraesCS2A01G362100.1	Wheat	mitochondrion, nucleus	86.4	86.7
TraesCS2B01G379900.1	Wheat	mitochondrion	86.13	86.44
KXG26672	Sorghum	mitochondrion, nucleus	86.04	86.12
Zm00001d025816_P002	Maize	mitochondrion, nucleus	85.07	84.33
HORVU2Hr1G087660.5	Barley	plastid	86.57	83.55
KRG90178	Soybean	mitochondrion	24.91	62.95
VIT_05s0049g02090.t01	Wine grape	mitochondrion	62.99	62.33
Solyc09g090870.2.1	Tomato	mitochondrion	62.19	61.92
Bra015033.1-P	Field mustard	mitochondrion	60.95	61.5
CDX77432	Canola	mitochondrion	60.87	61.41
CDY49227	Canola	mitochondrion	60.6	61.03
AT3G24320.1	Thale cress	mitochondrion	60.25	61.0
KRH33548	Soybean	nucleus	60.07	60.18
KRG90177	Soybean	cytosol	34.81	58.46
Os05t0274200-01	Rice	cytosol	11.4	13.69
Os07t0486000-02	Rice	cytosol	9.54	13.53
Os10t0509000-01	Rice	cytosol, nucleus	6.36	13.28
Os05t0498300-01	Rice	cytosol	9.1	12.73
Os01t0180600-01	Rice	mitochondrion, nucleus	13.43	12.42
Os04t0680700-01	Rice	plastid	4.68	10.66
Os04t0682900-01	Rice	plastid	6.98	9.2
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	5.65	9.0
Os04t0682800-01	Rice	plasma membrane	0.27	0.26
Os04t0683100-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:13.5.8.4	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EntrezGene:4336345	ProteinID:BAF15175.1	ProteinID:BAS89988.1
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:GIY-YIG_endonuc_sf	GO:GO:0000002	GO:GO:0000166
GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983
GO:GO:0032042	GO:GO:0032300	GO:GO:0042651	GO:GO:0043570	InterPro:IPR016151	InterPro:IPR035901
EnsemblPlantsGene:Os04g0507000	EnsemblPlants:Os04t0507000-01	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF82	UniProt:Q0JBW2	SMART:SM00534	SUPFAM:SSF52540	SUPFAM:SSF55271
SUPFAM:SSF82771	UniParc:UPI0000DD917B	RefSeq:XP_015636674.1	SEG:seg	:	:

Description

Similar to DNA mismatch repair protein. (Os04t0507000-01)

Coordinates

chr4:-:25323826..25340028

Molecular Weight (calculated)

125232.0 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.071

Length

1132 amino acids

Sequence
(BLAST)

0001: MAIQRLLASS LVAATPRWLP VAADSFLRRR HRPRCSPLPA LLFNRRSWSK PRKVSRSISI VSRKMNKQGD LCNEGMLPHI LWWKEKMERC RKPSSMQLTQ
0101: RLVYSNILGL DPTLRNGSLK DGSLNTEMLQ FKSKFPREVL LCRVGDFYEA VGFDACILVE HAGLNPFGGL RSDSIPKAGC PVMNLRQTLD DLTRCGYSVC
0201: IVEEIQGPTQ ARARKGRFIS GHAHPGSPYV FGLAEVDHDV EFPDPMPVVG ISRSAKGYCL ISVLETMKTY SAEEGLTEEA VVTKLRICRY HHLYLHSSLR
0301: NNSSGTSRWG EFGEGGLLWG ECSGKSFEWF DGNPIEELLC KVREIYGLEE KTVFRNVSVS LEGRPQPLYL GTATQIGVIP TEGIPSLLKI VLPPNFGGLP
0401: SLYIRDLLLN PPSFDVASSV QEACRLMGSI TCSIPEFTCI PAAKLVKLLE SKEVNHIEFC RIKNVLDEVL FMGSNAELSA ILNKLLDPAA IVTGFKVEAD
0501: ILVNECSFIS QRIAEVISLG GESDQAITSS EYIPKEFFND MESSWKGRVK RVHAEEEFSN VDIAAEALST AVIEDFLPII SRVKSVMSSN GSSKGEISYA
0601: KEHESVWFKG RRFTPNVWAN TPGELQIKQL KPAIDSKGRK VGEEWFTTIK VENALTRYHE ACDNAKRKVL ELLRGLSSEL QDKINVLVFC STMLIITKAL
0701: FGHVSEGRRR GWVLPTISPL CKDNVTEEIS SEMELSGTFP YWLDTNQGNA ILNDVHMHSL FILTGPNGGG KSSMLRSVCA AALLGICGLM VPAASAVIPH
0801: FDSIMLHMKA YDSPADGKSS FQIEMSEIRS LVCRATARSL VLIDEICRGT ETAKGTCIAG SIIERLDNVG CIGIISTHLH GIFDLPLSLH NTDFKAMGTE
0901: IIDRCIQPTW KLMDGICRES LAFQTARKEG MPDLIIRRAE ELYLAMSTNS KQTSSAVHHE ISIANSTVNS LVEKPNYLRN GLELQSGSFG LLRKEIESVV
1001: TTICKKKLLD LYNKRSISEL IEVVCVAVGA REQPPPSTVG RSSIYVIIRR DSKLYIGQTD DLVGRLSAHR SKEGMQDATI LYILVPGKSI ACQLETLLIN
1101: QLPLKGFKLI NKADGKHRNF GISLVPGEAI AA

Best Arabidopsis Sequence Match ( AT3G24320.1 )
(BLAST)

0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL

Arabidopsis Description

MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.