Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0049g02090.t01 | Wine grape | mitochondrion | 72.03 | 71.59 |
| Solyc09g090890.1.1 | Tomato | extracellular | 8.97 | 70.83 |
| CDX77432 | Canola | mitochondrion | 65.88 | 66.76 |
| Bra015033.1-P | Field mustard | mitochondrion | 65.79 | 66.67 |
| AT3G24320.1 | Thale cress | mitochondrion | 65.52 | 66.64 |
| CDY49227 | Canola | mitochondrion | 65.7 | 66.46 |
| KRG90178 | Soybean | mitochondrion | 25.51 | 64.73 |
| KRH33548 | Soybean | nucleus | 64.2 | 64.6 |
| TraesCS2B01G379900.1 | Wheat | mitochondrion | 62.97 | 63.48 |
| TraesCS2D01G359500.1 | Wheat | mitochondrion | 62.88 | 63.39 |
| TraesCS2A01G362100.1 | Wheat | mitochondrion, nucleus | 62.62 | 63.12 |
| KXG26672 | Sorghum | mitochondrion, nucleus | 62.71 | 63.04 |
| KRG90177 | Soybean | cytosol | 37.29 | 62.91 |
| Os04t0507000-01 | Rice | mitochondrion | 61.92 | 62.19 |
| Zm00001d025816_P002 | Maize | mitochondrion, nucleus | 62.45 | 62.17 |
| HORVU2Hr1G087660.5 | Barley | plastid | 62.62 | 60.7 |
| HORVU6Hr1G001030.1 | Barley | cytosol | 6.6 | 49.02 |
| HORVU6Hr1G000990.1 | Barley | cytosol | 6.6 | 49.02 |
| Solyc10g018530.1.1 | Tomato | endoplasmic reticulum, vacuole | 6.6 | 14.68 |
| Solyc07g018350.2.1 | Tomato | nucleus | 10.47 | 14.67 |
| Solyc03g025890.1.1 | Tomato | nucleus | 13.98 | 14.23 |
| Solyc01g079520.2.1 | Tomato | plastid | 16.36 | 14.18 |
| Solyc03g080010.2.1 | Tomato | plastid | 10.03 | 13.8 |
| Solyc06g069230.2.1 | Tomato | cytosol | 11.43 | 13.79 |
| Solyc08g007330.2.1 | Tomato | cytosol, peroxisome, plastid | 9.23 | 13.26 |
| Solyc02g078390.2.1 | Tomato | plastid | 9.67 | 12.13 |
| Solyc10g018540.1.1 | Tomato | cytosol | 2.29 | 7.58 |
Protein Annotations
| MapMan:13.5.8.4 | Gene3D:3.40.1170.10 | Gene3D:3.40.50.300 | InterPro:DNA_mismatch_repair_MutS-lik_N | InterPro:DNA_mismatch_repair_MutS_C | InterPro:DNA_mismatch_repair_MutS_N |
| InterPro:GIY-YIG_endonuc_sf | GO:GO:0000002 | GO:GO:0000166 | GO:GO:0000404 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006298 | GO:GO:0006950 | GO:GO:0008094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030983 | GO:GO:0032042 | GO:GO:0032300 | GO:GO:0042651 |
| GO:GO:0043570 | InterPro:IPR016151 | InterPro:IPR035901 | UniProt:K4CWB3 | InterPro:P-loop_NTPase | PFAM:PF00488 |
| PFAM:PF01624 | ScanProsite:PS00486 | PANTHER:PTHR11361 | PANTHER:PTHR11361:SF82 | SMART:SM00534 | SUPFAM:SSF52540 |
| SUPFAM:SSF55271 | SUPFAM:SSF82771 | EnsemblPlantsGene:Solyc09g090870.2 | EnsemblPlants:Solyc09g090870.2.1 | UniParc:UPI000276B198 | SEG:seg |
Description
DNA mismatch repair protein MSH1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G24320) UniProtKB/Swiss-Prot;Acc:Q84LK0]
Coordinates
chr9:-:70257449..70291161
Molecular Weight (calculated)
126859.0 Da
IEP (calculated)
7.604
GRAVY (calculated)
-0.130
Length
1137 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYWVTAKNVV VSVPRWRSLS LFLRPPLRRR FLSFSPHTLC REQIRCVKER KFFATTAKKL KQPKSIPEEK DYVNIMWWKE RMEFLRKPSS ALLAKRLTYC
0101: NLLGVDPSLR NGSLKEGTLN SEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEYAGLN PFGGLHSDSI PKAGCPVVNL RQTLDDLTRN GFSVCVVEEV
0201: QGPTQARARK SRFISGHAHP GSPYVFGLVG DDQDLDFPEP MPVVGISRSA KGYCIISVYE TMKTYSVEDG LTEEAVVTKL RTCRCHHFFL HNSLKNNSSG
0301: TSRWGEFGEG GLLWGECNAR QQEWLDGNPI DELLFKVKEL YGLNDDIPFR NVTVVSENRP RPLHLGTATQ IGAIPTEGIP CLLKVLLPPH CSGLPVLYIR
0401: DLLLNPPAYE ISSDIQEACR LMMSVTCSIP DFTCISSAKL VKLLELREAN HVEFCKIKSM VEEILQLYRN SELRAIVELL MDPTWVATGL KVDFDTLVNE
0501: CGKISCRISE IISVHGENDQ KISSYPIIPN DFFEDMELLW KGRVKRIHLE EAYAEVEKAA DALSLAITED FLPIISRIRA TMAPLGGTKG EILYAREHGA
0601: VWFKGKRFVP TVWAGTAGEE QIKQLRPALD SKGKKVGEEW FTTMRVEDAI ARYHEASAKA KSRVLELLRG LSSELLSKIN ILIFASVLNV IAKSLFSHVS
0701: EGRRRNWIFP TITQFNKCQD TEALNGTDGM KIIGLSPYWF DAARGTGVQN TVDMQSMFLL TGPNGGGKSS LLRSLCAAAL LGMCGFMVPA ESAVIPHFDS
0801: IMLHMKSYDS PVDGKSSFQI EMSEIRSLIT GATSRSLVLI DEICRGTETA KGTCIAGSVI ETLDEIGCLG IVSTHLHGIF DLPLKIKKTV YKAMGAEYVD
0901: GQPIPTWKLI DGICKESLAF ETAQREGIPE ILIQRAEELY NSAYGNQIPR KIDQIRPLCS DIDLNSTDNS SDQLNGTRQI ALDSSTKLMH RMGISSKKLE
1001: DAICLICEKK LIELYKMKNP SEMPMVNCVL IAAREQPAPS TIGASSVYIM LRPDKKLYVG QTDDLEGRVR AHRLKEGMEN ASFLYFLVSG KSIACQLETL
1101: LINQLPNHGF QLTNVADGKH RNFGTTNLSP EPSSALR
0101: NLLGVDPSLR NGSLKEGTLN SEMLQFKSKF PREVLLCRVG DFYEAIGFDA CILVEYAGLN PFGGLHSDSI PKAGCPVVNL RQTLDDLTRN GFSVCVVEEV
0201: QGPTQARARK SRFISGHAHP GSPYVFGLVG DDQDLDFPEP MPVVGISRSA KGYCIISVYE TMKTYSVEDG LTEEAVVTKL RTCRCHHFFL HNSLKNNSSG
0301: TSRWGEFGEG GLLWGECNAR QQEWLDGNPI DELLFKVKEL YGLNDDIPFR NVTVVSENRP RPLHLGTATQ IGAIPTEGIP CLLKVLLPPH CSGLPVLYIR
0401: DLLLNPPAYE ISSDIQEACR LMMSVTCSIP DFTCISSAKL VKLLELREAN HVEFCKIKSM VEEILQLYRN SELRAIVELL MDPTWVATGL KVDFDTLVNE
0501: CGKISCRISE IISVHGENDQ KISSYPIIPN DFFEDMELLW KGRVKRIHLE EAYAEVEKAA DALSLAITED FLPIISRIRA TMAPLGGTKG EILYAREHGA
0601: VWFKGKRFVP TVWAGTAGEE QIKQLRPALD SKGKKVGEEW FTTMRVEDAI ARYHEASAKA KSRVLELLRG LSSELLSKIN ILIFASVLNV IAKSLFSHVS
0701: EGRRRNWIFP TITQFNKCQD TEALNGTDGM KIIGLSPYWF DAARGTGVQN TVDMQSMFLL TGPNGGGKSS LLRSLCAAAL LGMCGFMVPA ESAVIPHFDS
0801: IMLHMKSYDS PVDGKSSFQI EMSEIRSLIT GATSRSLVLI DEICRGTETA KGTCIAGSVI ETLDEIGCLG IVSTHLHGIF DLPLKIKKTV YKAMGAEYVD
0901: GQPIPTWKLI DGICKESLAF ETAQREGIPE ILIQRAEELY NSAYGNQIPR KIDQIRPLCS DIDLNSTDNS SDQLNGTRQI ALDSSTKLMH RMGISSKKLE
1001: DAICLICEKK LIELYKMKNP SEMPMVNCVL IAAREQPAPS TIGASSVYIM LRPDKKLYVG QTDDLEGRVR AHRLKEGMEN ASFLYFLVSG KSIACQLETL
1101: LINQLPNHGF QLTNVADGKH RNFGTTNLSP EPSSALR
0001: MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
0101: RLMYTNLLGL DPSLRNGSLK DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC PIMNLRQTLD DLTRNGYSVC
0201: IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR
0301: HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP
0401: SLYVRDLLLN PPAYDIALKI QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE ILKLLMDPTW VATGLKIDFD
0501: TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY
0601: AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA
0701: LFSHACEGRR RKWVFPTLVG FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS ICAAALLGIS GLMVPAESAC
0801: IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM
0901: GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM
1001: IEPEAIECLS IGARELPPPS TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL LINQLHEQGY SLANLADGKH
1101: RNFGTSSSLS TSDVVSIL
Arabidopsis Description
MSH1DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.