Factsheet for Solyc08g007330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	52.53	98.35
VIT_00s0229g00200.t01	Wine grape	cytosol	15.15	83.33
KRH28123	Soybean	cytosol	79.55	79.35
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	79.04	79.04
Bra021052.1-P	Field mustard	cytosol	78.66	78.66
CDX76574	Canola	cytosol, peroxisome, plasma membrane	78.66	78.66
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	77.15	77.74
Os07t0486000-02	Rice	cytosol	76.64	76.07
TraesCS2B01G198300.1	Wheat	cytosol	76.52	75.09
TraesCS2A01G171900.1	Wheat	cytosol	76.39	74.69
EER99382	Sorghum	cytosol	74.62	73.6
GSMUA_Achr8P08030_001	Banana	cytosol	27.65	73.49
HORVU2Hr1G031870.17	Barley	cytosol	76.26	73.3
Zm00001d006382_P004	Maize	cytosol	70.83	66.39
Solyc07g018350.2.1	Tomato	nucleus	21.72	21.21
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	12.75	19.77
Solyc06g069230.2.1	Tomato	cytosol	21.72	18.24
Solyc03g025890.1.1	Tomato	nucleus	21.21	15.04
Solyc10g018540.1.1	Tomato	cytosol	6.06	13.99
Solyc01g079520.2.1	Tomato	plastid	22.73	13.72
Solyc09g090890.1.1	Tomato	extracellular	1.77	9.72
Solyc02g078390.2.1	Tomato	plastid	10.86	9.48
Solyc03g080010.2.1	Tomato	plastid	9.72	9.32
Solyc09g090870.2.1	Tomato	mitochondrion	13.26	9.23
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.13	0.83

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0000794	GO:GO:0000795
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006298	GO:GO:0006950	GO:GO:0007049	GO:GO:0007129	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0010777	GO:GO:0016043	GO:GO:0016787
GO:GO:0030983	GO:GO:0043073	GO:GO:0045143	GO:GO:0051026	UniProt:K4CIM0	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g007330.2	EnsemblPlants:Solyc08g007330.2.1
UniParc:UPI000276C62A	SEG:seg	:	:	:	:

Description

DNA mismatch repair protein MSH4 [Source:Projected from Arabidopsis thaliana (AT4G17380) UniProtKB/Swiss-Prot;Acc:F4JP48]

Coordinates

chr8:-:1892968..1906524

Molecular Weight (calculated)

88718.8 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.079

Length

792 amino acids

Sequence
(BLAST)

001: MEEDAGERSS FVAGFIENRA KEVGVAAFDL RSASLHLSQY IETSSSYQNT KTLLQFYEPM VIIVSPNKLA ADGMVGVSQL ADRVCSSTKK VIMARGCFDD
101: TRGAVLVKGL AAKEPSALGL DSYYKQYYLC LAAAAATIKW IEAEKGVIIT NHSLLVTFNG SFDHMNIDST SVQNLEIIEP MHASLLGTNN KKRSLFHMLK
201: TTRTIGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQALR KFPKETDRVL CHFCFKPKRV TNEVLASDNG RRSQIMISSI ILLKTALDAL
301: PLLSKVLKEA KSCLLGNVYK TICENEKYTS ISKRIGEVID DDVLHTRVPF VARTQQCFAV KAGADGLLDM ARRSFCDTSE AIHSLANKYR QDFKLPNLKI
401: PFNNRQGFYF SIPQKDIQGK LPSKFIQVVK HGNNVRCSSL ELASLNVRNK SAAKECWLRT ALCLEALMDA IREDVSVLTV LSEVLCLLDM MVNSFAHTIS
501: TKPVDRYTRA RFTCDGPLAI DSGRHPILES IHNDFIPNGI FLSEASNMAI VMGPNMSGKS TYLQQVCLMV ILAQIGCYIP ARFATLRVVD RIFTRMGTMD
601: SLESNSSTFM TEMKETAFIM QNVSHRSLIV MDELGRATSS SDGLAIAWSC CEHLLALKAY SIFATHMENL SALSTMYPNV KILHFDVDVR NNRMDFKFQL
701: KDGSRHVPHY GLMLAGVAGL PSSVVETAKR ITSRITEKEM KRMEVNCRQY EDVQLIYRVA QRLMCLKYSD QDEDSLREAL QNLKENYIGG RL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.