CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021052.1-P	Field mustard	cytosol	98.61	98.61
CDX76575	Canola	cytosol	17.17	97.84
CDY59535	Canola	cytosol	17.17	97.84
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	94.82	95.55
AT4G17380.1	Thale cress	cytosol, nucleus, plasma membrane	93.43	93.43
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	78.66	78.66
PGSC0003DMT400032552	Potato	cytosol, peroxisome, plastid	41.41	77.54
Os07t0486000-02	Rice	cytosol	73.99	73.43
TraesCS2B01G198300.1	Wheat	cytosol	73.99	72.61
TraesCS2A01G171900.1	Wheat	cytosol	73.61	71.98
EER99382	Sorghum	cytosol	72.6	71.61
HORVU2Hr1G031870.17	Barley	cytosol	73.61	70.75
Zm00001d006382_P004	Maize	cytosol	67.93	63.67
CDY40145	Canola	cytosol, extracellular, plastid	4.04	38.1
CDX82340	Canola	nucleus	22.22	18.78
CDY52899	Canola	nucleus	22.22	18.78
CDY65220	Canola	cytosol	18.18	17.96
CDY19637	Canola	cytosol	17.68	16.45
CDY50199	Canola	plastid	21.21	15.63
CDX86902	Canola	cytosol	2.4	15.32
CDX92716	Canola	plastid	20.71	15.02
CDY47171	Canola	mitochondrion, nucleus	20.33	14.73
CDY25338	Canola	plastid	20.45	14.73
CDX91808	Canola	mitochondrion, nucleus, plastid	21.59	12.94
CDX95680	Canola	cytosol	2.15	12.78
CDX90956	Canola	plastid	20.83	12.34
CDY41773	Canola	plastid	11.49	11.36
CDY28796	Canola	plastid	11.49	11.35
CDX91525	Canola	plastid	11.36	10.15
CDX77432	Canola	mitochondrion	13.64	9.63
CDY49227	Canola	mitochondrion	13.64	9.61
CDY16386	Canola	plastid	11.24	7.54

Protein Annotations

Gene3D:1.10.1420.10	MapMan:13.3.6.5.1.2.1	Gene3D:3.40.50.300	GO:A0A078CKN2	EnsemblPlants:CDX76574	ProteinID:CDX76574
ProteinID:CDX76574.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00127016001	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF05190
PFAM:PF05192	PIRSF:PIRSF005813	PANTHER:PTHR11361	PANTHER:PTHR11361:SF21	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EF4C5F	SEG:seg	:	:

Description

BnaA08g08260D

Coordinates

chrLK031807:-:2183584..2189034

Molecular Weight (calculated)

89086.0 Da

IEP (calculated)

8.121

GRAVY (calculated)

-0.086

Length

792 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVVGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATNKW IEAEKGVIVT NHSLTVTFNG SFSHMNIDAT SVENLEIIDP FHNSLLGTSN KKRSLFQMFK
201: TTKTVGGTRL LRANLLQPLK DIKTINTRLN CLDELMSNEE LFYGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVLGFDNT RRSQNMISSI ILLKTALDAL
301: PLLAMALKDA KCFLLANIYK TVCENDRYAS IRKKVGEVID DDVLHARVPF VARSQQCFAL KAGIDGFLDM ARRTFCDTSE AIHNLARKYR EEFNLPNLKL
401: PFNNRQGFFF RISQKEVQGK LPSKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFVRT EICLEALMDA IREDVSALTL LAEVLCLLDM IVNSFAHSIS
501: TKPGYRYSRP ELTDSGPLAI DAGRHPILES IHNDFVPNSI FMSEASNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATMRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVSNRYLIV MDELGRATSS SDGLAMAWSC CEHLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PNTVIETART ITSRITDKEL KRIELNCEKH QEMHRIYKVA QKLICLKYSK QNEDSIRQAL QNLKDSFTEG RL

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.