CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028373.1-P	Field mustard	mitochondrion, plastid	96.98	95.58
CDY25338	Canola	plastid	95.24	94.64
AT3G24495.1	Thale cress	mitochondrion	81.98	80.79
VIT_11s0016g04090.t01	Wine grape	nucleus	62.21	60.5
KRH39265	Soybean	mitochondrion	59.47	60.24
Solyc07g018350.2.1	Tomato	nucleus	44.01	59.31
KRH48416	Soybean	cytosol	59.29	57.4
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	54.99	53.95
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	51.24	45.83
TraesCS3B01G136600.1	Wheat	mitochondrion	50.96	45.58
KXG31683	Sorghum	mitochondrion, nucleus	51.33	45.57
TraesCS3D01G119400.1	Wheat	mitochondrion	50.69	45.34
Os01t0180600-01	Rice	mitochondrion, nucleus	50.69	45.26
Zm00001d039596_P004	Maize	nucleus	51.05	45.04
CDY40145	Canola	cytosol, extracellular, plastid	3.2	41.67
CDX91808	Canola	mitochondrion, nucleus, plastid	28.55	23.62
CDX90956	Canola	plastid	28.73	23.49
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	15.0	20.87
CDY52899	Canola	nucleus	17.75	20.7
CDX82340	Canola	nucleus	17.75	20.7
CDX76574	Canola	cytosol, peroxisome, plasma membrane	14.73	20.33
CDY50199	Canola	plastid	19.3	19.63
CDX92716	Canola	plastid	19.12	19.14
CDY65220	Canola	cytosol	12.17	16.58
CDY19637	Canola	cytosol	11.89	15.28
CDX76575	Canola	cytosol	1.83	14.39
CDY59535	Canola	cytosol	1.83	14.39
CDY28796	Canola	plastid	10.16	13.84
CDY41773	Canola	plastid	10.06	13.73
CDX95680	Canola	cytosol	1.65	13.53
CDY49227	Canola	mitochondrion	12.99	12.63
CDX77432	Canola	mitochondrion	12.72	12.39
CDX91525	Canola	plastid	9.61	11.84
CDX86902	Canola	cytosol	1.28	11.29
CDY16386	Canola	plastid	9.61	8.89

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	GO:A0A078IBF5
UniProt:A0A078IBF5	EnsemblPlants:CDY47171	ProteinID:CDY47171	ProteinID:CDY47171.1	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00086867001	InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF121	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	UniParc:UPI0004EEC96A	:	:	:

Description

BnaA01g22970DBnaA01g22970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBF5]

Coordinates

chrLK032701:+:124005..129775

Molecular Weight (calculated)

120542.0 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.232

Length

1093 amino acids

Sequence
(BLAST)

0001: MQRQKSILSF FQKPSQATQR SVPGDAATSG VGGLRSTAKE RGINSDASVR SVERNVPKPV DDDVRGVDTP PEKVPRRVLP SNFKAAESAG GASSLFSSIM
0101: HKFVKVDGPP ECSGERNVAP FRDSSVSKMP ESVFPTNNAQ PQDRDRTFCV YKPRLVEDDD VLGPDTPGTR PSVPRLKRVL EDGVAFTENK ASLFDSNKRM
0201: KLFEDRICGE KKDVNEGTKF EWLEPSRIRD ANRRRPDDPL YDRKTLYIPA DVFKKMSASQ KQYWSVKSEY MDVVLFFKVG KFYELYELDA ELGHKELDWK
0301: MTMSGVGKCR QVGISESGID DAVQKLLARG YKVGRIEQLE TSDQAKARGA NTIIPRKLVQ VLTPSTASEG NLGPDPVHLL AIKEVKMELE KCSTVYGFAF
0401: VDCASLRFWV GSISDDASCA ALGALLMQVS PKEVIYESKG LSRESQQALR KYTLTGSTAV QLNPRPQEMG DADACGVRNM IESSGYFRGS SESWNSAVDG
0501: LTESGIALSA LGELINHLSR LKLEDVLKNG DIHPYRVYSG CLRIDGQTMV NLEIFNNSFD GGPSGKYNFF FIGTLYKFLD NCVSPTGKRL LRNWICHPLK
0601: DIGSINKRLD VVEEFTANSE IMQITGQYLH KLPDLERLLG RIKSTVQSSA YLLPALLGKK VLKQRVKSFG QLVKGFRSGI DLLLAVQKES NIIRLLCKLC
0701: KLPILEGKGG LELFLSQFEA AIDSDFPDYQ NHDVTEENAE TLTILIDLFI EKAAECSEVI HTISCLDVLR SFAISASLSA GSMARPVIFP ESKSTIQNQE
0801: TNGPTLKIQG LWHPFAVPAD GQLPVPNDLL LGEAGSSSIH PRSLLLTGPN MGGKSTLLRA TCLAVIFAQL GCYVPCETCE LSLVDTIFTR LGASDRIMTG
0901: ESTFLVECTE AASVLQNATQ DSLVILDELG RGTSTFDGYA IAYSVFRHMV ERVKCRMLFA THYHPLTKEF SSHPRVTLKH MACAFKSRSD QEPGGCDQDL
1001: VFLYRLAEGA CPESYGLQVA LMAGIPKQVV ETASVAAQAM KRSIGENFKS SELRSEFSSL HEEWLKTLVG ISQVVDDDKA ISSISVARVK AMR

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.