Factsheet for Bra028373.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47171	Canola	mitochondrion, nucleus	95.58	96.98
CDY25338	Canola	plastid	96.12	96.91
AT3G24495.1	Thale cress	mitochondrion	81.7	81.7
KRH39265	Soybean	mitochondrion	59.51	61.17
VIT_11s0016g04090.t01	Wine grape	nucleus	61.95	61.12
Solyc07g018350.2.1	Tomato	nucleus	44.09	60.3
KRH48416	Soybean	cytosol	59.24	58.19
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	55.27	55.03
TraesCS3A01G117500.1	Wheat	mitochondrion, nucleus	51.22	46.48
TraesCS3B01G136600.1	Wheat	mitochondrion	50.95	46.24
KXG31683	Sorghum	mitochondrion, nucleus	51.31	46.22
Os01t0180600-01	Rice	mitochondrion, nucleus	50.86	46.08
TraesCS3D01G119400.1	Wheat	mitochondrion	50.68	45.99
Zm00001d039596_P004	Maize	nucleus	50.95	45.6
Bra028327.1-P	Field mustard	extracellular, vacuole	5.14	34.55
Bra000896.1-P	Field mustard	plastid	28.76	23.86
Bra001709.1-P	Field mustard	nucleus	17.67	20.92
Bra021052.1-P	Field mustard	cytosol	14.79	20.71
Bra019156.1-P	Field mustard	plastid	19.21	19.65
Bra035922.1-P	Field mustard	cytosol	2.52	16.57
Bra035777.1-P	Field mustard	cytosol	11.27	14.79
Bra035923.1-P	Field mustard	cytosol	1.98	14.38
Bra022693.1-P	Field mustard	plastid	10.19	14.09
Bra015033.1-P	Field mustard	mitochondrion	12.89	12.75
Bra022497.1-P	Field mustard	plastid	9.56	11.96
Bra035921.1-P	Field mustard	cytosol	3.97	11.76

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.4	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra028373
EnsemblPlants:Bra028373.1	EnsemblPlants:Bra028373.1-P	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	InterPro:IPR016151
InterPro:IPR036678	UniProt:M4EHV8	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF121
SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271
UniParc:UPI00025453DE	:	:	:	:	:

Description

AT3G24495 (E=0.0) MSH7, MSH6-2, ATMSH7 | MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding

Coordinates

chrA01:+:18003053..18008739

Molecular Weight (calculated)

122565.0 Da

IEP (calculated)

6.473

GRAVY (calculated)

-0.223

Length

1109 amino acids

Sequence
(BLAST)

0001: MQRQKSILSF FQKPSQATQP SVPGDAATSG VGGLRSTAKE GCINSDASRN VPKPVDDDVR GVDTPPEKVP RRVLPSNFKA AESAGGASSL FSSIMHKFVK
0101: VDGPPECSGE RNVAPLRDSF VSKMPESVFP ERRSNNAQPQ DRDYTFRVDN PRLVEDDDVL GPDTPGTRPS VPRLKRVLED GVAFTENKVS LFDSNKRMKL
0201: FGDRICGEKK EVNEGTKFEW LEPSRIRDAN RRRPDDPLYD RKTLYIPADV FKKMSASQKQ YWSVKSEYMD VVLFFKVGKF YELYELDAEL GHKELDWKMT
0301: MSGVGKCRQV GISESGIDDA VQKLLARGYK VGRIEQLETS DQAKARGANT IIPRKLVQVL TPSTASEGNL GPDPVHLLAI KEVKMELEKC STVYGFAFVD
0401: CASLRFWVGS ISDDASCAAL GALLMQVSPK EVIYESKGLS RESQQALTKY TLTGSTAVQL NPRPQEMGDA DACGVRNMIE SSGYFRGSSE SWNSAVNGLT
0501: ESGIALSALG ELINHLSRLK LEDVLKNGDI HPYKVYSGCL RIDGQTMVNL EIFNNSFDGG PSGKYFFFFI GTLYKFLDNC VSPTGKRLLR NWICHPLKDI
0601: GSINKRLDVV EEFTANSEIM QITGQYLQKL PDLERLLGRI KSTVQSSAYL LPALLGKKVL KQRVKSFGQL VKGFRSGIDL LLAVQKESNM IRLLCKLCKL
0701: PILVGKSGLE IFLSQFEAAI DSDFPDYQNH DVTEENAETL TILIDLFIEK AAEWSEVIHT ISCLDVLRSF AISASLSAGS MARPVIFPES KSTIQNQETN
0801: GPTLKIQGLW HPFAVPADGQ LPVPNDLLLG EAGSSSIHPR SLLLTGPNMG GKSTLLRATC LAVIFAQLGC YVPCETCELS LVDSIFTRLG ASDRIMTGES
0901: TFLVECTEAA SVLQNATQDS LVILDELGRG TSTFDGYAIA YSVFRHMVER VKCRMLFATH YHPLTKEFSS HPRVTLKHMA CAFKSRSDQE QGGCDQDLVF
1001: LYRLAEGACP ESYGLQVALM AGIPKQVVET ASVAAQAMKR SIGENFKSSE LRSEFSSLHE EWLKTLVGIS QVVDDDKAMF EEEDVSDMLI CLWHEIRSSC
1101: SVAQVKAMR

Best Arabidopsis Sequence Match ( AT3G24495.1 )
(BLAST)

0001: MQRQRSILSF FQKPTAATTK GLVSGDAASG GGGSGGPRFN VKEGDAKGDA SVRFAVSKSV DEVRGTDTPP EKVPRRVLPS GFKPAESAGD ASSLFSNIMH
0101: KFVKVDDRDC SGERSREDVV PLNDSSLCMK ANDVIPQFRS NNGKTQERNH AFSFSGRAEL RSVEDIGVDG DVPGPETPGM RPRASRLKRV LEDEMTFKED
0201: KVPVLDSNKR LKMLQDPVCG EKKEVNEGTK FEWLESSRIR DANRRRPDDP LYDRKTLHIP PDVFKKMSAS QKQYWSVKSE YMDIVLFFKV GKFYELYELD
0301: AELGHKELDW KMTMSGVGKC RQVGISESGI DEAVQKLLAR GYKVGRIEQL ETSDQAKARG ANTIIPRKLV QVLTPSTASE GNIGPDAVHL LAIKEIKMEL
0401: QKCSTVYGFA FVDCAALRFW VGSISDDASC AALGALLMQV SPKEVLYDSK GLSREAQKAL RKYTLTGSTA VQLAPVPQVM GDTDAAGVRN IIESNGYFKG
0501: SSESWNCAVD GLNECDVALS ALGELINHLS RLKLEDVLKH GDIFPYQVYR GCLRIDGQTM VNLEIFNNSC DGGPSGTLYK YLDNCVSPTG KRLLRNWICH
0601: PLKDVESINK RLDVVEEFTA NSESMQITGQ YLHKLPDLER LLGRIKSSVR SSASVLPALL GKKVLKQRVK AFGQIVKGFR SGIDLLLALQ KESNMMSLLY
0701: KLCKLPILVG KSGLELFLSQ FEAAIDSDFP NYQNQDVTDE NAETLTILIE LFIERATQWS EVIHTISCLD VLRSFAIAAS LSAGSMARPV IFPESEATDQ
0801: NQKTKGPILK IQGLWHPFAV AADGQLPVPN DILLGEARRS SGSIHPRSLL LTGPNMGGKS TLLRATCLAV IFAQLGCYVP CESCEISLVD TIFTRLGASD
0901: RIMTGESTFL VECTETASVL QNATQDSLVI LDELGRGTST FDGYAIAYSV FRHLVEKVQC RMLFATHYHP LTKEFASHPR VTSKHMACAF KSRSDYQPRG
1001: CDQDLVFLYR LTEGACPESY GLQVALMAGI PNQVVETASG AAQAMKRSIG ENFKSSELRS EFSSLHEDWL KSLVGISRVA HNNAPIGEDD YDTLFCLWHE
1101: IKSSYCVPK

Arabidopsis Description

MSH7DNA mismatch repair protein MSH7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMV7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.