Factsheet for Bra028327.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40145	Canola	cytosol, extracellular, plastid	29.7	58.33
GSMUA_Achr6P13480_001	Banana	cytosol	64.24	41.25
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	35.76	29.35
PGSC0003DMT400021699	Potato	cytosol	19.39	20.13
Bra001709.1-P	Field mustard	nucleus	89.09	15.69
AT3G18524.1	Thale cress	nucleus	86.67	15.26
KRH03809	Soybean	nucleus	76.36	13.38
VIT_17s0000g04170.t01	Wine grape	cytosol	76.36	13.33
PGSC0003DMT400010422	Potato	cytosol	75.15	13.15
Solyc06g069230.2.1	Tomato	cytosol	74.55	13.04
EER99643	Sorghum	nucleus	73.94	12.95
TraesCS1D01G131600.3	Wheat	nucleus	72.73	12.74
Os05t0274200-01	Rice	cytosol	72.73	12.74
TraesCS1A01G135100.1	Wheat	nucleus	72.73	12.51
TraesCS1B01G149700.3	Wheat	nucleus	72.12	12.34
HORVU1Hr1G030930.22	Barley	plastid	72.73	12.04
Zm00001d022028_P005	Maize	nucleus	48.48	8.99
Bra021052.1-P	Field mustard	cytosol	33.33	6.94
Bra019156.1-P	Field mustard	plastid	35.15	5.35
Bra028373.1-P	Field mustard	mitochondrion, plastid	34.55	5.14
Bra022693.1-P	Field mustard	plastid	23.64	4.86
Bra035777.1-P	Field mustard	cytosol	21.82	4.26
Bra000896.1-P	Field mustard	plastid	30.91	3.81
Bra022497.1-P	Field mustard	plastid	19.39	3.61
Bra015033.1-P	Field mustard	mitochondrion	21.82	3.21
GSMUA_Achr6P13490_001	Banana	cytosol	9.09	2.28
Bra035922.1-P	Field mustard	cytosol	0.61	0.59
Bra035923.1-P	Field mustard	cytosol	0.0	0.0
Bra035921.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra028327	EnsemblPlants:Bra028327.1	EnsemblPlants:Bra028327.1-P	InterPro:DNA_mismatch_repair_MutS_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	GO:GO:0032300
UniProt:M4EHR2	InterPro:Msh2	InterPro:P-loop_NTPase	PFAM:PF00488	PANTHER:PTHR11361	PANTHER:PTHR11361:SF35
SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI00025437DD	:	:	:

Description

AT3G18524 (E=1e-049) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding

Coordinates

chrA01:-:18509437..18510207

Molecular Weight (calculated)

17702.5 Da

IEP (calculated)

7.365

GRAVY (calculated)

0.375

Length

165 amino acids

Sequence
(BLAST)

001: MGGKSTFIRQ VGVTVLMAQV GSFVPCDEAS VSIRDCIFAR VGAGDCQVSL ALCFFVFETA GLCLAWAICE RLVQVKKAPT LFATHFHELT ALAQANSEVA
101: GNTVGVANFH VSAHIDTESR KLTMLYKVEP GACDQSFGIH VAEFANFPES VVALAREKAT KVKKC

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.