Factsheet for Os05t0274200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G131600.3	Wheat	nucleus	87.9	87.9
EER99643	Sorghum	nucleus	87.47	87.47
Zm00001d022028_P005	Maize	nucleus	81.53	86.29
TraesCS1A01G135100.1	Wheat	nucleus	87.79	86.24
TraesCS1B01G149700.3	Wheat	nucleus	87.79	85.79
CDY40145	Canola	cytosol, extracellular, plastid	7.22	80.95
HORVU1Hr1G030930.22	Barley	plastid	85.24	80.54
GSMUA_Achr6P13480_001	Banana	cytosol	21.02	77.04
Bra028327.1-P	Field mustard	extracellular, vacuole	12.74	72.73
VIT_17s0000g04170.t01	Wine grape	cytosol	72.93	72.7
GSMUA_Achr6P13490_001	Banana	cytosol	50.74	72.53
KRH03809	Soybean	nucleus	70.28	70.28
Solyc06g069230.2.1	Tomato	cytosol	69.75	69.67
PGSC0003DMT400010422	Potato	cytosol	69.32	69.25
AT3G18524.1	Thale cress	nucleus	66.56	66.92
Bra001709.1-P	Field mustard	nucleus	65.39	65.74
CDY52899	Canola	nucleus	65.39	65.74
CDX82340	Canola	nucleus	65.39	65.74
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	12.0	56.22
PGSC0003DMT400021699	Potato	cytosol	8.39	49.69
Os07t0486000-02	Rice	cytosol	18.79	22.18
Os05t0498300-01	Rice	cytosol	16.03	18.66
Os01t0180600-01	Rice	mitochondrion, nucleus	19.96	15.36
Os04t0682900-01	Rice	plastid	11.57	12.69
Os04t0680700-01	Rice	plastid	6.69	12.68
Os04t0507000-01	Rice	mitochondrion	13.69	11.4
Os10t0509000-01	Rice	cytosol, nucleus	6.48	11.25
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	7.32	9.7
Os04t0683100-01	Rice	cytosol, nucleus	0.0	0.0
Os04t0682800-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.1	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300	EntrezGene:4338271
UniProt:B9FNL5	ProteinID:BAS93104.1	ncoils:Coil	InterPro:DNA_mismatch_repair_Msh2	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS_C
InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	ProteinID:EEE63066.1
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006290	GO:GO:0006298	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030983	GO:GO:0032300	GO:GO:0045128	InterPro:IPR016151	InterPro:IPR036678
InterPro:Msh2	InterPro:MutS_con_dom_sf	EnsemblPlantsGene:Os05g0274200	EnsemblPlants:Os05t0274200-01	InterPro:P-loop_NTPase	PFAM:PF00488
PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF005813	ScanProsite:PS00486
PANTHER:PTHR11361	PANTHER:PTHR11361:SF35	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	UniParc:UPI0000E123E6	RefSeq:XP_015637550.1	SEG:seg	:	:

Description

DNA mismatch repair protein MSH2 (MUS1). (Os05t0274200-01)

Coordinates

chr5:+:11189467..11198038

Molecular Weight (calculated)

105346.0 Da

IEP (calculated)

5.397

GRAVY (calculated)

-0.277

Length

942 amino acids

Sequence
(BLAST)

001: MEGDDFLPEG GKLPELKLDA RQAQGFISFF KKLPQDSRAI RLFDRRDYYT AHGENATFIA KIYYHTMSAL RQLGSNSDGL SSVSVSKTMF ETIARNLLLE
101: RTDRTLELYE GSGSSWRLTK SGTPGNIGSF EDILFANNDM QDSPVTVALF PVFQEGQLYV GLSFVDLTNR KLGLSEFPED SRFTNVESAL VALGCKECLL
201: PADCEKSIDL KPLQDAITNC NVLLTERKKV EFKSRDLVQD LGRIIRGPVE PVRDLVSQFD YALGALGALV SYAELLADDT NYGNYTIEKY SLDRYMRLDS
301: AAVRALNIAE AKTDVNKNFS LFGLMNRTCT VGMGKRLLNR WLKQPLLDVN EINNRLDMVQ AFVEDPELRQ GLRYQLKRMS DIDRLTHALR KRTANLQPVV
401: KLYQSCIRVS YIKNVLQQYD GSFSALIRTK FLNSLDEWLT EDRFGRFASL VETAIDLDQL ENGEYRISPR YSSDLAVLKD ELSEVENHIN NLHKHTAADL
501: DLTIDKQLKL EKGQLGHVFR ISKKDEQKVR KKLTSNYIII ETRKDGVKFT SSKLKKLGDQ YQALLGEYTS CQKKVVDDVV RVSASFSEVF ENFAAILSEL
601: DVLQSFADLA TSSPIPYVRP EITASEEGDI ILEGSRHPCL EAQDGVNFIP NDCTLVREKS WFQIITGPNM GGKSTFIRQV GVNVLMAQVG SFVPCDRASI
701: SVRDCIFARV GAGDCQLRGV STFMQEMLET ASILKGASDK SLIIIDELGR GTSTYDGFGL AWAICEHLVE VTRAPTLFAT HFHELTALGH KSGDEHQHVP
801: NLGIANYHVG AHIDPSSRKL TMLYKVEPGA CDQSFGIHVA EFANFPEAVV ALAKSKAEEL EDFSTAPNFS DDSKDEVGSK RKRVFSPDDV TRGAARARLL
901: LEELASLPLD EMDGTKAAET VTKLKSDFEK DAADNPWLQQ FL

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.