CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028327.1-P	Field mustard	extracellular, vacuole	58.33	29.7
PGSC0003DMT400021697	Potato	cytosol, extracellular, nucleus	46.43	19.4
GSMUA_Achr6P13480_001	Banana	cytosol	48.81	15.95
CDY52899	Canola	nucleus	88.1	7.9
CDX82340	Canola	nucleus	86.9	7.79
Zm00001d022028_P005	Maize	nucleus	82.14	7.75
AT3G18524.1	Thale cress	nucleus	83.33	7.47
EER99643	Sorghum	nucleus	83.33	7.43
TraesCS1D01G131600.3	Wheat	nucleus	82.14	7.32
PGSC0003DMT400010422	Potato	cytosol	82.14	7.32
Solyc06g069230.2.1	Tomato	cytosol	82.14	7.32
Os05t0274200-01	Rice	cytosol	80.95	7.22
TraesCS1A01G135100.1	Wheat	nucleus	82.14	7.19
TraesCS1B01G149700.3	Wheat	nucleus	82.14	7.16
KRH03809	Soybean	nucleus	79.76	7.11
VIT_17s0000g04170.t01	Wine grape	cytosol	78.57	6.98
HORVU1Hr1G030930.22	Barley	plastid	82.14	6.92
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	38.1	4.07
CDX76574	Canola	cytosol, peroxisome, plasma membrane	38.1	4.04
PGSC0003DMT400021699	Potato	cytosol	7.14	3.77
CDY65220	Canola	cytosol	35.71	3.74
CDY50199	Canola	plastid	46.43	3.63
CDX92716	Canola	plastid	46.43	3.57
CDY19637	Canola	cytosol	35.71	3.53
GSMUA_Achr6P13490_001	Banana	cytosol	27.38	3.49
CDY41773	Canola	plastid	32.14	3.37
CDY28796	Canola	plastid	32.14	3.37
CDY47171	Canola	mitochondrion, nucleus	41.67	3.2
CDY25338	Canola	plastid	41.67	3.18
CDX91808	Canola	mitochondrion, nucleus, plastid	42.86	2.73
CDX90956	Canola	plastid	41.67	2.62
CDX91525	Canola	plastid	27.38	2.59
CDX77432	Canola	mitochondrion	32.14	2.41
CDY49227	Canola	mitochondrion	32.14	2.4
CDY16386	Canola	plastid	27.38	1.95
CDX95680	Canola	cytosol	2.38	1.5
CDX86902	Canola	cytosol	1.19	0.81
CDX76575	Canola	cytosol	0.0	0.0
CDY59535	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HNN3	UniProt:A0A078HNN3	EnsemblPlants:CDY40145	ProteinID:CDY40145
ProteinID:CDY40145.1	InterPro:DNA_mismatch_repair_MutS_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030983	GO:GO:0032300	EnsemblPlantsGene:GSBRNA2T00069075001	InterPro:Msh2	InterPro:P-loop_NTPase	PFAM:PF00488
PANTHER:PTHR11361	PANTHER:PTHR11361:SF35	SMART:SM00534	SUPFAM:SSF52540	UniParc:UPI0004EE9195	:

Description

BnaC06g05440DBnaC06g05440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNN3]

Coordinates

chrLK032464:+:63232..63875

Molecular Weight (calculated)

9201.3 Da

IEP (calculated)

7.184

GRAVY (calculated)

0.321

Length

84 amino acids

Sequence
(BLAST)

1: MRGESWFQII TGPNLGGKST FIRQVGVTVL MAQVGSFVPC DEASVSIRDC IFAHVGAGDC QLPGVSTFMQ EMLEIALIFK RSYR

Best Arabidopsis Sequence Match ( AT3G18524.1 )
(BLAST)

001: MEGNFEEQNK LPELKLDAKQ AQGFLSFYKT LPNDTRAVRF FDRKDYYTAH GENSVFIAKT YYHTTTALRQ LGSGSNALSS VSISRNMFET IARDLLLERN
101: DHTVELYEGS GSNWRLVKTG SPGNIGSFED VLFANNEMQD TPVVVSIFPS FHDGRCVIGM AYVDLTRRVL GLAEFLDDSR FTNLESSLIA LGAKECIFPA
201: ESGKSNECKS LYDSLERCAV MITERKKHEF KGRDLDSDLK RLVKGNIEPV RDLVSGFDLA TPALGALLSF SELLSNEDNY GNFTIRRYDI GGFMRLDSAA
301: MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI KTRLDIVQCF VEEAGLRQDL RQHLKRISDV ERLLRSLERR RGGLQHIIKL
401: YQSTIRLPFI KTAMQQYTGE FASLISERYL KKLEALSDQD HLGKFIDLVE CSVDLDQLEN GEYMISSSYD TKLASLKDQK ELLEQQIHEL HKKTAIELDL
501: QVDKALKLDK AAQFGHVFRI TKKEEPKIRK KLTTQFIVLE TRKDGVKFTN TKLKKLGDQY QSVVDDYRSC QKELVDRVVE TVTSFSEVFE DLAGLLSEMD
601: VLLSFADLAA SCPTPYCRPE ITSSDAGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGKSW FQIVTGPNMG GKSTFIRQVG VIVLMAQVGS FVPCDKASIS
701: IRDCIFARVG AGDCQLRGVS TFMQEMLETA SILKGASDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KRAPTLFATH FHELTALAQA NSEVSGNTVG
801: VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA NFPESVVALA REKAAELEDF SPSSMIINNE ESGKRKSRED DPDEVSRGAE RAHKFLKEFA
901: AIPLDKMELK DSLQRVREMK DELEKDAADC HWLRQFL

Arabidopsis Description

MSH2DNA mismatch repair protein MSH2 [Source:UniProtKB/Swiss-Prot;Acc:O24617]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.