CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76575	Canola	cytosol	100.0	100.0
Bra035923.1-P	Field mustard	cytosol	92.81	84.31
VIT_00s0229g00200.t01	Wine grape	cytosol	80.58	77.78
Bra035922.1-P	Field mustard	cytosol	92.81	76.33
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	98.56	17.43
CDX76574	Canola	cytosol, peroxisome, plasma membrane	97.84	17.17
GSMUA_Achr8P08030_001	Banana	cytosol	34.53	16.11
KRH28123	Soybean	cytosol	79.14	13.85
TraesCS2B01G198300.1	Wheat	cytosol	75.54	13.01
Os07t0486000-02	Rice	cytosol	74.1	12.91
TraesCS2A01G171900.1	Wheat	cytosol	74.82	12.84
EER99382	Sorghum	cytosol	73.38	12.7
HORVU2Hr1G031870.17	Barley	cytosol	74.1	12.5
Zm00001d006382_P004	Maize	cytosol	74.82	12.31
CDX91808	Canola	mitochondrion, nucleus, plastid	17.99	1.89
CDY47171	Canola	mitochondrion, nucleus	14.39	1.83
CDY52899	Canola	nucleus	12.23	1.81
CDX82340	Canola	nucleus	12.23	1.81
CDY65220	Canola	cytosol	10.07	1.75
CDY25338	Canola	plastid	13.67	1.73
CDX90956	Canola	plastid	15.83	1.65
CDY19637	Canola	cytosol	10.07	1.65
CDY50199	Canola	plastid	11.51	1.49
CDX92716	Canola	plastid	10.79	1.37
CDX77432	Canola	mitochondrion	7.91	0.98
CDY49227	Canola	mitochondrion	7.91	0.98
CDY41773	Canola	plastid	3.6	0.62
CDY28796	Canola	plastid	3.6	0.62
CDX91525	Canola	plastid	3.6	0.56
CDY16386	Canola	plastid	2.88	0.34
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	0.0	0.0
CDX95680	Canola	cytosol	0.0	0.0
CDX86902	Canola	cytosol	0.0	0.0
CDY40145	Canola	cytosol, extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:3.30.420.110	MapMan:35.1	UniProt:A0A078CI92	EnsemblPlants:CDY59535	ProteinID:CDY59535	ProteinID:CDY59535.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00026212001	InterPro:IPR036678	InterPro:MutS_con_dom_sf	UniParc:UPI00006C606A

Description

BnaCnng35160DBnaA08g08250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CI92]

Coordinates

chrLK033774:+:45322..46083

Molecular Weight (calculated)

15365.3 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.093

Length

139 amino acids

Sequence
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPC VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LELDPHARV

Best Arabidopsis Sequence Match ( AT4G17380.1 )
(BLAST)

001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD
101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK
201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL
301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL
401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS
501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD
601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL
701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL

Arabidopsis Description

MSH4DNA mismatch repair protein MSH4 [Source:UniProtKB/Swiss-Prot;Acc:F4JP48]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.