CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28796	Canola	plastid	96.25	96.13
CDX86902	Canola	cytosol	13.48	87.1
AT5G54090.1	Thale cress	plastid	85.02	85.55
CDX95680	Canola	cytosol	11.61	69.92
GSMUA_Achr1P01790_001	Banana	mitochondrion	17.98	64.57
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	36.95	54.71
KRH72584	Soybean	plastid	53.31	54.05
VIT_16s0098g00680.t01	Wine grape	cytosol, plastid	51.44	50.37
Os10t0509000-01	Rice	cytosol, nucleus	32.96	48.71
Solyc03g080010.2.1	Tomato	plastid	49.81	48.31
OQU91528	Sorghum	plastid	47.69	45.97
TraesCS1B01G200700.1	Wheat	plastid	46.69	45.17
TraesCS1A01G179700.1	Wheat	plastid	46.57	44.83
TraesCS1D01G178000.1	Wheat	plastid	46.07	44.35
HORVU1Hr1G047640.7	Barley	plastid	46.32	42.5
Zm00001d013887_P002	Maize	plastid	43.07	40.45
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	15.86	39.81
GSMUA_Achr1P01820_001	Banana	plastid	11.36	38.72
KRH16964	Soybean	cytosol, nucleus	7.87	37.95
CDY40145	Canola	cytosol, extracellular, plastid	3.37	32.14
CDX91525	Canola	plastid	26.72	24.13
CDY16386	Canola	plastid	26.72	18.12
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	11.49	11.7
CDX76574	Canola	cytosol, peroxisome, plasma membrane	11.36	11.49
CDY52899	Canola	nucleus	12.73	10.89
CDY50199	Canola	plastid	14.61	10.88
CDX77432	Canola	mitochondrion	15.11	10.78
CDX82340	Canola	nucleus	12.61	10.78
CDY65220	Canola	cytosol	10.61	10.6
CDY49227	Canola	mitochondrion	14.86	10.59
CDX92716	Canola	plastid	14.36	10.53
CDY47171	Canola	mitochondrion, nucleus	13.73	10.06
CDY25338	Canola	plastid	13.61	9.91
CDY19637	Canola	cytosol	10.36	9.75
CDX91808	Canola	mitochondrion, nucleus, plastid	15.11	9.16
CDX90956	Canola	plastid	14.98	8.98
CDY59535	Canola	cytosol	0.62	3.6
CDX76575	Canola	cytosol	0.62	3.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HYF9	UniProt:A0A078HYF9	EnsemblPlants:CDY41773	ProteinID:CDY41773
ProteinID:CDY41773.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	GO:GO:0030983
GO:GO:0045910	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00073645001	InterPro:MutS2	InterPro:P-loop_NTPase	PFAM:PF00488
PIRSF:PIRSF005814	ScanProsite:PS00486	PANTHER:PTHR11361	PANTHER:PTHR11361:SF81	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	UniParc:UPI0004EE46C0	SEG:seg	:	:

Description

BnaC02g13830DBnaC02g13830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYF9]

Coordinates

chrLK032506:-:5225..9101

Molecular Weight (calculated)

88481.5 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.246

Length

801 amino acids

Sequence
(BLAST)

001: MQALSITFCN CALLVRRNSV GNRNRVNLSF ISSSSSSSSA PTLICRSKSK SQTDSLRVLE WDKLCDVVAS FARTSLGRQA TKKKLWSLDQ SFDESLKLLE
101: ETEAAIKMLD HGSFCLDLSS IQISLVEWGI RNAKRKMSLR ADQALEVASL LRFFDNLQLD LKAAIKQDGD WYKRFMPLSE MIMLPVINRS FIKLVEQVID
201: VDGKIKDSAS SELRLSRERV QTVERKLQQL LEAIVRSQKA NESVMVVAEI DGRWCIQTSS SQLTSVDGLL LSSGSGGGTA SEPIAAVSMN DELQSARASV
301: AKAEAEILSM LTAKMQMDLD QIDDVMKYSI QLDVINARAT YSRAYGASHP DIYLPPEDGV DSESLSAGEP SPANNFSGEE SLPRKEWLLY LPRCYHPLLL
401: HQHKKRIRKK QEAVKYHKTA DTVSGAPPVP ADFQIAKGTR VLVITGPNTG GKTICLKSVG LAAMMAKSGL YVLASESARL PWFDNIYADI GDEQSLLQSL
501: STFSGHLKQI SEIISHSTSR SLVLLDEVGA GTNPLEGAAL GMAILESFAE SGSLLTMATT HHGELKMLKY SNSAFENACM EFDDLNLKPT FKILWGVPGR
601: SNAINIAERL GLPCDIINSA RELYGSASAE INEVILDMER YKQDYQRLLN ESRRYIRISR ELHENLLTAE KNINNHATRE RLKMRQELTQ AGSMARSTLR
701: RTLQQFRVSA AQSSRSKVAT QLKTTKDGDN ATPSPSMVAR RPVSEDSARK GNTKLPEIGD SVFVSSLGKK VTVLKVEQSK KEILVQVGIM KMKVKLADVV
801: A

Best Arabidopsis Sequence Match ( AT5G54090.1 )
(BLAST)

001: MQTLSIAFCN SALVIRRRNS IGNRNRVKLS LISSSSPTLV CHSKSKSQTD SLRVLEWDKL CDVVASFART SLGREATKKK LWSLDQSFSE SLKLLDETDA
101: AIKMLEHGSF CLDLSSIHIS LVESGIRHAK RRLSLRADQA LEVASLLRFF ENLQLDLKAA IKQDGDWYKR FMPLSELIVH PVINRSFVKL VEQVIDPDGT
201: IKDSASSALR QSRERVQTLE RKLQQLLDAI IRSQKDDESV MLAAEIDGRW CIQMSSNQLT SVNGLLLSSG SGGGTAAEPI AAVSMNDDLQ SARASVAKAE
301: AEILSMLTEK MQDGLCQIEV VLSYSIQLDV INARATYSRA YGGAHPDIYL PPEDEVESLS AGENSPDINL PSEKPLSKKE WLLYLPRCYH PLLLYQHKKG
401: IRKTRETVKF HKTADTVLSG APPIPADFQI SKGTRVLVIT GPNTGGKTIC LKSVGLAAMM AKSGLYVLAT ESARIPWFDN IYADIGDEQS LLQSLSTFSG
501: HLKQISEILS HSTSRSLVLL DEVGAGTNPL EGAALGMAIL ESFAESGSLL TMATTHHGEL KTLKYSNSAF ENACMEFDDL NLKPTYKILW GVPGRSNAIN
601: IADRLGLPCD IIESARELYG SASAEINEVI LDMERYKQEY QRLLNESRVY IRLSRELHEN LLTAQKNIND HSTKERRKMR QELTQAGSMT RSTLRRTLQQ
701: FRSSAGKSSQ SKVATQLQTK VKTTKDEDNG IRSSSVVERR PLPEAAAQKV PEVGSSVFVS SLGKKATVLK VEHSKKEILV QVGIMKMKVK LTDVVA

Arabidopsis Description

DNA mismatch repair protein MutS, type 2 [Source:UniProtKB/TrEMBL;Acc:F4JYU0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.