CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000896.1-P	Field mustard	plastid	99.18	99.18
CDX91808	Canola	mitochondrion, nucleus, plastid	94.32	95.46
AT4G02070.1	Thale cress	plastid	85.94	86.78
VIT_07s0005g01370.t01	Wine grape	plastid	63.58	65.54
KRG96523	Soybean	plastid	60.81	63.86
Solyc01g079520.2.1	Tomato	plastid	60.66	61.81
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	54.9	57.57
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	43.98	56.87
TraesCS5D01G212500.1	Wheat	nucleus	46.45	54.57
Zm00001d020424_P002	Maize	nucleus, plastid	52.36	54.01
KXG35601	Sorghum	mitochondrion, nucleus, plastid	52.66	53.99
TraesCS5A01G206300.1	Wheat	mitochondrion	51.83	52.54
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	26.1	49.09
CDY40145	Canola	cytosol, extracellular, plastid	2.62	41.67
CDY47171	Canola	mitochondrion, nucleus	23.49	28.73
CDY25338	Canola	plastid	23.41	28.45
CDY50199	Canola	plastid	20.42	25.4
CDX92716	Canola	plastid	20.64	25.27
CDX82340	Canola	nucleus	15.63	22.31
CDY52899	Canola	nucleus	15.48	22.09
CDY65220	Canola	cytosol	12.71	21.2
CDY59530	Canola	endoplasmic reticulum, nucleus, peroxisome	12.27	20.87
CDX76574	Canola	cytosol, peroxisome, plasma membrane	12.34	20.83
CDY19637	Canola	cytosol	12.57	19.74
CDX77432	Canola	mitochondrion	14.21	16.93
CDY49227	Canola	mitochondrion	14.14	16.81
CDY59535	Canola	cytosol	1.65	15.83
CDX76575	Canola	cytosol	1.65	15.83
CDY28796	Canola	plastid	9.05	15.09
CDY41773	Canola	plastid	8.98	14.98
CDX86902	Canola	cytosol	1.35	14.52
CDX91525	Canola	plastid	9.2	13.87
CDX95680	Canola	cytosol	1.12	11.28
CDY16386	Canola	plastid	9.27	10.5

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
GO:A0A078DNY0	EnsemblPlants:CDX90956	ProteinID:CDX90956	ProteinID:CDX90956.1	ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C
InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core
InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSBRNA2T00151708001	InterPro:IPR002999
InterPro:IPR016151	InterPro:IPR036678	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624
PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677	ScanProsite:PS00486	PANTHER:PTHR11361
PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	InterPro:Tudor	UniParc:UPI0004EF4C4C	SEG:seg

Description

BnaA03g26360D

Coordinates

chrLK031864:-:1535189..1542321

Molecular Weight (calculated)

148566.0 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.532

Length

1337 amino acids

Sequence
(BLAST)

0001: MAPSRRQISG RSPLVNPQRQ ITSFFGKSAS SSSPSPSPLS NHKTPKSNPN PNSPSPSPLS NTKIPKSNSN PSSPPLSNNK LPKSNPPARS PSPGPTTPSP
0101: VHPKLKKPLL VIGQTPSPPK FTETTYGDEV VGKQVRIYWP LDKKWYDGSV TSYNKGEGKH VVEYEDGEEE SLDLGKEKIE WVVEGDSVNR FKRLRRGASA
0201: FRRVVTDEDE DVEMGNVEEE KEDKSDGDDS SDEDWGKNVG KEVCESEEDD VELDAEDDTM DEEEIVEEKD EETPSKTDSR KRKKTSEVAK PGGEKKIKTD
0301: KVTTFKGFKA SVVEPVKKIG EADKVVKSLD DNMLDGDALA RFGARESEKF RFMGIDRRDA KRRRPTDENY DPRTLYLPPD FVKRLTGGQR QWWEFKSKHM
0401: DKVLFFKMGK FYELYEMDAH VGAKELDLRY MKGEQPHCGF PEKNFSVNIE KLVQKGYRVL VVEQTETPDQ LERRRKEKGS KDKVVKREIC AVVTRGTLTD
0501: GEMVLTNPEA SYLMALTEGG ESLTDEKAEH NFGVCLVDVA TKKIIIGQFK DDQDCSALSC VLSEIRPVEV IKPANALSSA TERTIVRHTR NPLVNNLVPL
0601: SEFWDAEKTI HEIGILYKGF SCQPSSAYSG EGKVLGDPPL SNESGSSCLP KMLSELANGD KDGSLALSAL GGAIYYLRQA FLDESLLRFA KFESLPYCDF
0701: SNFTVKQHMV LDAAALENLE IFENSRNGGV SGTLYAQLNQ CITASGKRLL KTWLARPLYN PELIKERQDA VAILRGENLP YSLEFRKALS RLPDMERLIA
0801: RIFSSIEASG RNGDKVVLYE DVAKKQLQEF ISTLRGCETM VEACSSLRAS LEHDNSRRLR HLLTPGQSLP NISPFIKYFK DAFDWVEAHD SGRVVPHEGA
0901: DEEYDFTCKT VKELEGSLTK HLKEQRKLLG DASIKYVTVG KDEYLLEVPE SLSGSIPQDY ELCSSKKGVF RYWTPTIKKL LKELAQAKSE KESALKSISQ
1001: RLIGRFCEHQ EEWRQLVSAT AELDVLISLA FASDSYEGVR CRPVISSSKS VDVPHLSAHG LGHPVLRGDS LGRGSFVPND VKIGGAKQAS FILLTGPNMG
1101: GKSTLLRQVC LAVILSQIGA DVPAETFELS PVDRIFVRMG AKDHIMAGQS TFLTELSETA VMLSSATRNS LVVLDELGRG TATSDGQAIA ESVLEHFIDK
1201: VQCRGMFSTH YHRLSMDYQT NPQVSLCHMG CQVGEGSGGV EEVTFLYRLT PGACPKSYGV NVARLAGLPD DVLQRAVIKS QEFEGLYGKN HKKADRKMAE
1301: MIKQIISGVA SDSDAATSKH LLSELHYKAN TYLQLTN

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.