CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01370.t01	Wine grape	plastid	69.52	68.23
Solyc01g079520.2.1	Tomato	plastid	64.65	62.73
CDX91808	Canola	mitochondrion, nucleus, plastid	63.94	61.62
AT4G02070.1	Thale cress	plastid	63.94	61.48
CDX90956	Canola	plastid	63.86	60.81
Bra000896.1-P	Field mustard	plastid	63.79	60.73
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	59.39	59.29
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	47.45	58.41
TraesCS5D01G212500.1	Wheat	nucleus	49.49	55.36
KXG35601	Sorghum	mitochondrion, nucleus, plastid	55.85	54.52
Zm00001d020424_P002	Maize	nucleus, plastid	55.38	54.4
TraesCS5A01G206300.1	Wheat	mitochondrion	55.15	53.22
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	28.59	51.2
KRH35336	Soybean	cytosol	10.84	32.47
KRH39265	Soybean	mitochondrion	25.06	29.56
KRH48416	Soybean	cytosol	25.37	28.61
KRG91481	Soybean	plastid	21.6	25.7
KRH28123	Soybean	cytosol	13.83	22.17
KRH03809	Soybean	nucleus	16.1	21.76
KRH73763	Soybean	cytosol	12.57	19.75
KRH14375	Soybean	cytosol	12.49	19.58
KRH16965	Soybean	cytosol, mitochondrion, nucleus, plastid	7.86	18.48
KRH33415	Soybean	cytosol, extracellular, plastid	1.73	17.89
KRH72584	Soybean	plastid	10.29	16.58
KRG90177	Soybean	cytosol	8.56	16.17
KRH33548	Soybean	nucleus	13.51	15.22
KRG90178	Soybean	mitochondrion	4.95	14.06
KRG88723	Soybean	cytosol, extracellular, mitochondrion, nucleus	1.34	14.05
KRH50031	Soybean	plastid	9.27	12.91
KRH20465	Soybean	cytosol	1.57	9.85
KRG88725	Soybean	nucleus	2.2	9.82
KRH16964	Soybean	cytosol, nucleus	0.63	4.82

Protein Annotations

Gene3D:1.10.1420.10	EntrezGene:100811104	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10
Gene3D:3.40.50.300	UniProt:A0A0R0ER15	EMBL:ACUP02012155	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH
InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N	InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom
EnsemblPlantsGene:GLYMA_19G216000	GO:GO:0000166	GO:GO:0000404	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006298	GO:GO:0006950
GO:GO:0006974	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300	GO:GO:0043570
InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678	EnsemblPlants:KRG96523	ProteinID:KRG96523	ProteinID:KRG96523.1
InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190
PFAM:PF05192	PIRSF:PIRSF037677	PANTHER:PTHR11361	PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533
SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748
InterPro:Tudor	UniParc:UPI0006EDA33C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:46899842..46909482

Molecular Weight (calculated)

141883.0 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.420

Length

1273 amino acids

Sequence
(BLAST)

0001: MAPSRRNTNG RSPLVNQQSQ ITSFFTKSAS PSPSPTLSKT NPNPNPNPNP SPTPATPSPL NPKRSKPLLV IGASTSPPSA SPSLYFQELI GRRIKVYWPL
0101: DKAWYEGSVK SFDSLTSKHV VRYDDGEEES LDLSKEKIEW LQESSSKKLK RLRRGVPAVR KMMIDDDDEE VEEEESHKKD DDDDDDSNDE DWGMKAALED
0201: AGDAEEDTDL EDENDVAERA KGKKVETKKR KLSGTEKQEP AKKSKSGVEV GKGAFKLSVL EPTSNLEIKE TSNGTDNVAI TEISERFALR EAQKLRFLKE
0301: DRRDAKRRRP GDENYDSRTI YLPPDFLRSL SDGQKQWWEF KSKHMDKVLF FKMGKFYELF EMDAHVGAKE LDLQYMKGDQ PHCGFPEKNF SMNVEKLARK
0401: GYRVLVVEQT ETPEQLELRR KEKGSKDKVV RREICSVVTK GTLTDGELLS ANPEAAYLMA LTEHHENHPT EVSEHLYGVC IVDVATSRVI LGQFKDDLEC
0501: SVLCCILSEI RPVEIVKPAK LLSAETERVL LKHTRDPLVN ELVPIVEFWD ADKTVDQLKR IYGNSNDVSV NNNELDCLPD VLLELVKTGD DSRSALSALG
0601: GALYYLRQAF LDERLLRFAK FELLPCSGFG DLASKPYMVL DAAALENLEI FENSRNGDSS GTLYAQLNQC VTAFGKRLLK TWLARPLCHV ESVKERQEAV
0701: AGLKGVNLPS ALEFRKALYK LPDMERLLAR IFSSSEASGR NANRVVLYED ASKKQLQEFI LALRGCEQMA QACFSLGVIL SHVKSRQLHH LLTPGKVLPD
0801: VCMDLNHFKD AFDWVEANNS GRIIPREGVD TEYDSACKAV KEIESSLLKH LKEQMKLLGS TSITYVNVGK DTYLLEVPEN LSKNIPRDYE LRSSRKGFFR
0901: YWSPDIKVFL RELSHAESEK ESLLKSTLQR LIGRFCEHHA KWKQLVSTTA ELDVLISLAI AGDYYEGPTC RPSFVGTLCT KEAPYLHAKS LGHPVLRSDT
1001: LGKGDFVPND ITIGGSDHAS FILLTGPNMG GKSTLLRQVC LTVILAQVGA DVPAESFDLS PVDRIFVRMG AKDNIMAGQS TFLTELSETA SMLSSATCNS
1101: LVALDELGRG TATSDGQAIA ESVLEHLVRK VQCRGLFSTH YHRLAVDYLK DPKVCLCHMA CQVGSGIAGL DEVTFLYRLT PGACPKSYGV NVARIAGLPT
1201: SVLQKAAAKS REFEATYGKC RKVSTVTNSP NKNWVDEIAA IIQILNNAAT QETICVGSLS ELQDKARELM QGC

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.