Factsheet for GSMUA_Achr5P24510_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	50.59	62.38
TraesCS5D01G212500.1	Wheat	nucleus	53.88	60.37
VIT_07s0005g01370.t01	Wine grape	plastid	61.33	60.29
KRG96523	Soybean	plastid	59.29	59.39
KXG35601	Sorghum	mitochondrion, nucleus, plastid	60.55	59.2
Zm00001d020424_P002	Maize	nucleus, plastid	59.92	58.95
TraesCS5A01G206300.1	Wheat	mitochondrion	60.08	58.07
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	32.08	57.52
Solyc01g079520.2.1	Tomato	plastid	59.14	57.47
CDX91808	Canola	mitochondrion, nucleus, plastid	57.33	55.34
AT4G02070.1	Thale cress	plastid	57.41	55.29
Bra000896.1-P	Field mustard	plastid	57.65	54.97
CDX90956	Canola	plastid	57.57	54.9
GSMUA_Achr7P13290_001	Banana	cytosol, plastid	24.86	28.46
GSMUA_Achr6P13480_001	Banana	cytosol	5.25	26.07
GSMUA_Achr6P29480_001	Banana	cytosol	7.37	25.34
GSMUA_Achr8P08020_001	Banana	cytosol	9.33	24.09
GSMUA_AchrUn_...	Banana	nucleus	12.71	23.41
GSMUA_AchrUn_...	Banana	plastid	6.75	22.87
GSMUA_Achr6P13490_001	Banana	cytosol	11.22	21.7
GSMUA_Achr8P12760_001	Banana	cytosol	3.06	20.74
GSMUA_Achr1P01780_001	Banana	nucleus	2.98	20.54
GSMUA_Achr1P01790_001	Banana	mitochondrion	3.29	18.83
GSMUA_Achr8P12780_001	Banana	cytosol, nucleus, plasma membrane	7.92	16.86
GSMUA_Achr1P01810_001	Banana	extracellular, plasma membrane	4.16	16.61
GSMUA_Achr8P08030_001	Banana	cytosol	3.61	15.44
GSMUA_Achr6P29470_001	Banana	mitochondrion	5.1	14.51
GSMUA_Achr7P04320_001	Banana	plastid	8.78	12.31
GSMUA_Achr1P01820_001	Banana	plastid	2.2	11.91
GSMUA_Achr8P12770_001	Banana	extracellular, nucleus, plasma membrane	1.96	11.01

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006290	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030983	EnsemblPlantsGene:GSMUA_Achr5G24510_001	EnsemblPlants:GSMUA_Achr5P24510_001
EnsemblPlants:GSMUA_Achr5T24510_001	InterPro:IPR002999	InterPro:IPR016151	InterPro:IPR036678	UniProt:M0T1C6	InterPro:MutS_con_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192
PIRSF:PIRSF037677	PANTHER:PTHR11361	PANTHER:PTHR11361:SF31	SMART:SM00333	SMART:SM00533	SMART:SM00534
SUPFAM:SSF48334	SUPFAM:SSF52540	SUPFAM:SSF53150	SUPFAM:SSF55271	InterPro:Tudor	UniParc:UPI000296A6C1
SEG:seg	:	:	:	:	:

Description

DNA mismatch repair protein Msh6-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G24510_001]

Coordinates

chr5:+:25836874..25855760

Molecular Weight (calculated)

142378.0 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.380

Length

1275 amino acids

Sequence
(BLAST)

0001: MAPSRRLSGR SPLVRQQSQI TSFFSLGKNS KESPSPSPDP SPSQPKEKKP RLVIPPSPAS GAKVPLTAAK NCHTKEVVGK RIKVFWPLDK AWYEGRVSSF
0101: DEMSGKHLIC YVDGEEEALD LGKEKFEWIG EETPRSLRRL RRMSETVKMA CSSADVDNEI SEEDTADDEE WGKVGGEDAE EDNSDEVELE DEDEEEFVAS
0201: SGSRSKNSTG SKRRKTMNLA KLDCAKKIKF EKNRERTASK ASLSMTESNA VAPLSNDRRV QVLDSIGSTV TVEAAERFGK REAEKFRFLQ EGRRDVRGRR
0301: PGDKNYDPRT LYLPPEFLRT LSGGQRQWWE FKSKHMDKVL FFKMGKFYEL FEMDAHIGAR ELDLQYMKGE QPHCGFPEKN YSMNLERLTR KGYRVLVVEQ
0401: TETPEQLEIR RKEMGSKDKV VKREICAMVT QGTLMEGESL LRNPDTSYLL SIAEHFRSLE VPGKGGVVIG LCVVDVSTSK FMVGQFEDDL ERHWLCSILS
0501: ELRPVEVIKP SKALSPETER VIKNNTRNPL VNNLLPFDEF WDAERTINEI RKYYSLSEHY LAAQNGCTSA DNAGNCPVDL PDVLTELVNV GIDGSYALSA
0601: LGGCLFYLRQ AFLDEKLIKC AKFERLACSG FFNNLQKPYM ILDAAALENL EILENNRSGG LSGTLFAQLD HCVTAFGKRL LKGWLARPLY DIRSIVERQD
0701: AVACFKGAGL TSALEFRKEL SKLQDMERLL SRLFVSCEAH GRNANRVILY EDAAKKRLQE FIASLHGCEA MIQACSSLDT VLTSTESTLL HYLLTPGKGL
0801: PDMCSVIEHF KDAFDWSEAD RTGRIIPHEG GDVDYDAACK KLKDIESNLM RYLKEQRKVL GNSEVNYVAV GKDLYLLEVP ESLRGAVPAE YELQSSKKAH
0901: DFLNTYFLSE LSQAEAEKES KLKGILQRLI GQFSEHHSKW RQLVSVIAEL DVLISLAIAS DYYEGPTCRP VIKEVCHENE PYLSARGLGH PMLRSDALGK
1001: GSFVPNDVRI GGVGQPRFIL LTGPNMGGKS TLLRQVCLAV VLAQLGADVP AECFELSPVD RIFVRMGARD NIMAGQSTFL MELSETAGVL SSATQNSLVA
1101: LDELGRGTAT SDGQAIAASV FEYLVHRVQC RGLFSTHYHR LILEYEKNTK VSICHMACQV GKGVGGVEEV TFLYRLAPGS CPKSYGVNVA RLAGLPSSVL
1201: QKAAKKSNDF EISNGKHQPV AEVKISDTET DEGRTLIKKL LSISETWNLG EDSRVVTLSL LGDIQQRARW LVLGK

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.