Factsheet for Solyc01g079520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01370.t01	Wine grape	plastid	67.15	67.93
KRG96523	Soybean	plastid	62.73	64.65
CDX91808	Canola	mitochondrion, nucleus, plastid	61.81	61.39
AT4G02070.1	Thale cress	plastid	61.66	61.1
CDX90956	Canola	plastid	61.81	60.66
Bra000896.1-P	Field mustard	plastid	61.66	60.51
GSMUA_Achr5P24510_001	Banana	nucleus, plastid	57.47	59.14
HORVU5Hr1G061020.11	Barley	endoplasmic reticulum, golgi, plasma membrane	46.04	58.41
TraesCS5D01G212500.1	Wheat	nucleus	48.55	55.98
KXG35601	Sorghum	mitochondrion, nucleus, plastid	54.65	54.98
Zm00001d020424_P002	Maize	nucleus, plastid	53.73	54.4
TraesCS5A01G206300.1	Wheat	mitochondrion	53.96	53.68
Os09t0407600-01	Rice	mitochondrion, nucleus, plastid	27.13	50.07
Solyc07g018350.2.1	Tomato	nucleus	19.66	31.81
Solyc03g025890.1.1	Tomato	nucleus	21.49	25.25
Solyc06g069230.2.1	Tomato	cytosol	17.23	23.97
Solyc10g018530.1.1	Tomato	endoplasmic reticulum, vacuole	8.92	22.9
Solyc08g007330.2.1	Tomato	cytosol, peroxisome, plastid	13.72	22.73
Solyc09g090870.2.1	Tomato	mitochondrion	14.18	16.36
Solyc10g018540.1.1	Tomato	cytosol	4.04	15.45
Solyc03g080010.2.1	Tomato	plastid	8.38	13.32
Solyc02g078390.2.1	Tomato	plastid	8.92	12.9
Solyc09g090890.1.1	Tomato	extracellular	1.14	10.42

Protein Annotations

Gene3D:1.10.1420.10	MapMan:14.7.1.3	Gene3D:2.30.30.140	Gene3D:3.30.420.110	Gene3D:3.40.1170.10	Gene3D:3.40.50.300
ncoils:Coil	InterPro:DNA_mismatch_repair_MSH6_C	InterPro:DNA_mismatch_repair_MutS-lik_N	InterPro:DNA_mismatch_repair_MutS/MSH	InterPro:DNA_mismatch_repair_MutS_C	InterPro:DNA_mismatch_repair_MutS_N
InterPro:DNA_mismatch_repair_MutS_clamp	InterPro:DNA_mismatch_repair_MutS_core	InterPro:DNA_mismatch_repair_MutS_sf	InterPro:DNA_mmatch_repair_MutS_con_dom	GO:GO:0000166	GO:GO:0000404
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006298	GO:GO:0006950	GO:GO:0006974	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030983	GO:GO:0032300
GO:GO:0043570	InterPro:IPR016151	InterPro:IPR036678	UniProt:K4AXJ7	InterPro:MutS_con_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00488	PFAM:PF01624	PFAM:PF05188	PFAM:PF05190	PFAM:PF05192	PIRSF:PIRSF037677
PANTHER:PTHR11361	PANTHER:PTHR11361:SF31	SMART:SM00533	SMART:SM00534	SUPFAM:SSF48334	SUPFAM:SSF52540
SUPFAM:SSF53150	SUPFAM:SSF55271	SUPFAM:SSF63748	EnsemblPlantsGene:Solyc01g079520.2	EnsemblPlants:Solyc01g079520.2.1	UniParc:UPI0002761D41
SEG:seg	:	:	:	:	:

Description

DNA mismatch repair protein MSH6 [Source:Projected from Arabidopsis thaliana (AT4G02070) UniProtKB/Swiss-Prot;Acc:O04716]

Coordinates

chr1:+:78581116..78591131

Molecular Weight (calculated)

145702.0 Da

IEP (calculated)

5.850

GRAVY (calculated)

-0.456

Length

1312 amino acids

Sequence
(BLAST)

0001: MAASSRRSSN GRSPLVNQQS QITSFFSKAL SSSSSSPSPL LPKQIPQKSN PNPNTKSKPN LSPSTSPCVS PTTPSPLSAK RKITVPISAV VDLKPSYGQE
0101: VVDKRVKVYW PLDKIWYEGC VKSFDSSSGE HLVKYDDGDE EMIDLAEEKI EWVKAPVRKL RRLRRSSVVE EEEEEEEKLE DLKSVEDDSE DEDWGKDAAK
0201: LVSEGEDASE DMDLEIEEED DGVVGPKSRK VSGSKVVARK RKTGEGEKLT PSSSKKSKTL ADKRSANSKM DSAVIGVNGK EPTATNEDCA KASNNVNVLL
0301: CGAADRFGQR ETQKFPFLGK DRKDANRRSP DDADYDPRTI YLPPNFLKGL TGGQRQWWEF KSKHMDKVLF FKMGKFYELY EMDAHIGAQE LHLQYMKGEQ
0401: PHCGFPEKNF SMNVEKLARK GYRVLVVEQT ETPEQLENRR REMGSKDKVV RREICAVVTK GTLTEGEMLA ANPDASYLMA VTESSLTAAF QQEKRTYGVC
0501: MVDISTGRVI IGQFEDDSDC SALCCLLSEL RPVEIIKPAK LLSLETERVL MRHTRNPLVN ELVPLSEFWD AERTICEVKG LYRNMSLSLL SSSPNDMGTH
0601: ESTASEEDGE RNFLPDVLCE LINLGGNGSY ALSALGGVLY YLKQAFLDES LLKFAKFELL PLSGFCDGTQ KWNMVLDAAA LENLEIFENS RNGDSSGTLY
0701: AQINHCITAF GKRMLRSWLA RPLYRPESIR ERQDAVAGLK GPNLPSVLEF RKELSRLPDM ERLLARLFGS SEANGRNANK VTLYEDAAKK QLQEFISALR
0801: GCESMVQACS SLGVILGNTD SKLLHHLLTL GNGLPDVDSV LKHFKDAFDW VEASNSGRII PHEGVDEEYD AACKQVQEVE LKLAKHLKEQ RKLLGDSSID
0901: YVTIGKDAYL LEVPESLCRS TPKEYELQSS KKGYFRYWNP ILKKLIGELS HADSEKESKL KSILRRLIGR FCEHHNKWRE LVSTTAELDV LISLSIASDY
1001: YEGPTCRPNI KSVPSQDDVP VLLAENLGHP VLRSDSLDKG TFVSNNVSLG GPPNASFILL TGPNMGGKST LLRQVCMAVI LAQVGADVPA SSFDISPVDR
1101: IFVRMGAKDH IMAGQSTFLT ELLETASMLS MASRNSLVAL DELGRGTSTS DGQAIAESVL EHFVHKVQCR GMFSTHYHRL SIDYQKDSRV SLCHMACQIG
1201: KGSGGLEEVT FLYRLTPGAC PKSYGVNVAR LAGLPDDVLH RAAAKSEALE LYGHNKQSEE NPSENLTGKT AILLQNLINL VEHNKYDDND NNGVIDELSG
1301: LQNRARILLE QN

Best Arabidopsis Sequence Match ( AT4G02070.1 )
(BLAST)

0001: MAPSRRQISG RSPLVNQQRQ ITSFFGKSAS SSSSPSPSPS PSLSNKKTPK SNNPNPKSPS PSPSPPKKTP KLNPNPSSNL PARSPSPGPD TPSPVQSKFK
0101: KPLLVIGQTP SPPQSVVITY GDEVVGKQVR VYWPLDKKWY DGSVTFYDKG EGKHVVEYED GEEESLDLGK EKTEWVVGEK SGDRFNRLKR GASALRKVVT
0201: DSDDDVEMGN VEEDKSDGDD SSDEDWGKNV GKEVCESEED DVELVDENEM DEEELVEEKD EETSKVNRVS KTDSRKRKTS EVTKSGGEKK SKTDTGTILK
0301: GFKASVVEPA KKIGQADRVV KGLEDNVLDG DALARFGARD SEKFRFLGVD RRDAKRRRPT DENYDPRTLY LPPDFVKKLT GGQRQWWEFK AKHMDKVVFF
0401: KMGKFYELFE MDAHVGAKEL DIQYMKGEQP HCGFPEKNFS VNIEKLVRKG YRVLVVEQTE TPDQLEQRRK ETGSKDKVVK REVCAVVTKG TLTDGEMLLT
0501: NPDASYLMAL TEGGESLTNP TAEHNFGVCL VDVATQKIIL GQFKDDQDCS ALSCLLSEMR PVEIIKPAKV LSYATERTIV RQTRNPLVNN LVPLSEFWDS
0601: EKTIYEVGII YKRINCQPSS AYSSEGKILG DGSSFLPKML SELATEDKNG SLALSALGGA IYYLRQAFLD ESLLRFAKFE SLPYCDFSNV NEKQHMVLDA
0701: AALENLEIFE NSRNGGYSGT LYAQLNQCIT ASGKRLLKTW LARPLYNTEL IKERQDAVAI LRGENLPYSL EFRKSLSRLP DMERLIARMF SSIEASGRNG
0801: DKVVLYEDTA KKQVQEFIST LRGCETMAEA CSSLRAILKH DTSRRLLHLL TPGQSLPNIS SSIKYFKDAF DWVEAHNSGR VIPHEGADEE YDCACKTVEE
0901: FESSLKKHLK EQRKLLGDAS INYVTVGKDE YLLEVPESLS GSVPHDYELC SSKKGVSRYW TPTIKKLLKE LSQAKSEKES ALKSISQRLI GRFCEHQEKW
1001: RQLVSATAEL DVLISLAFAS DSYEGVRCRP VISGSTSDGV PHLSATGLGH PVLRGDSLGR GSFVPNNVKI GGAEKASFIL LTGPNMGGKS TLLRQVCLAV
1101: ILAQIGADVP AETFEVSPVD KICVRMGAKD HIMAGQSTFL TELSETAVML TSATRNSLVV LDELGRGTAT SDGQAIAESV LEHFIEKVQC RGFFSTHYHR
1201: LSVDYQTNPK VSLCHMACQI GEGIGGVEEV TFLYRLTPGA CPKSYGVNVA RLAGLPDYVL QRAVIKSQEF EALYGKNHRK TDHKLAAMIK QIISSVASDS
1301: DYSASKDSLC ELHSMANTFL RLTN

Arabidopsis Description

MSH6DNA mismatch repair protein MSH6 [Source:UniProtKB/Swiss-Prot;Acc:O04716]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.